Variant report

Variant	rs73353670
Chromosome Location	chr14:45534111-45534112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:45533911..45536188-chr14:45551786..45553326,2	MCF-7	breast:
2	chr14:45533372..45536193-chr14:45552306..45554767,3	MCF-7	breast:
3	chr14:45533318..45536569-chr14:45537193..45539977,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198718	Chromatin interaction
ENSG00000249163	Chromatin interaction
ENSG00000185246	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11848546	0.87[AMR][1000 genomes]
rs11850346	0.87[AMR][1000 genomes]
rs73340620	1.00[AMR][1000 genomes]
rs8013409	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	esv1795667	chr14:45361680-45721052	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1794986	chr14:45368685-45650813	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1803131	chr14:45441932-45726848	Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv933364	chr14:45467086-45705844	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv901842	chr14:45506857-45713358	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv901843	chr14:45506857-45833490	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv832785	chr14:45520670-45710741	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45465800-45552600	Weak transcription	HMEC	breast
2	chr14:45482800-45545400	Weak transcription	NHDF-Ad	bronchial
3	chr14:45493000-45535000	Weak transcription	Small Intestine	intestine
4	chr14:45508000-45540000	Weak transcription	K562	blood
5	chr14:45508400-45540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:45508400-45552400	Weak transcription	GM12878-XiMat	blood
7	chr14:45508400-45552600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:45509000-45541400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:45509200-45535000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:45509200-45543400	Weak transcription	Lung	lung
11	chr14:45509200-45552600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:45509200-45552600	Weak transcription	Aorta	Aorta
13	chr14:45509200-45552600	Weak transcription	Pancreas	Pancrea
14	chr14:45509200-45552800	Weak transcription	Right Ventricle	heart
15	chr14:45509200-45553000	Weak transcription	Gastric	stomach
16	chr14:45515800-45543000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:45516200-45534600	Weak transcription	Colon Smooth Muscle	Colon
18	chr14:45516200-45538800	Weak transcription	Ovary	ovary
19	chr14:45516200-45539400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:45516200-45552600	Weak transcription	Thymus	Thymus
21	chr14:45516400-45534600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr14:45516400-45539400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr14:45516400-45552600	Weak transcription	NH-A	brain
24	chr14:45516400-45552800	Weak transcription	Fetal Brain Male	brain
25	chr14:45516800-45552600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:45519400-45539800	Weak transcription	HUVEC	blood vessel
27	chr14:45520800-45535000	Weak transcription	Fetal Muscle Leg	muscle
28	chr14:45521400-45542000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:45521800-45534600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr14:45522200-45541200	Weak transcription	Adipose Nuclei	Adipose
31	chr14:45522400-45534800	Weak transcription	Osteobl	bone
32	chr14:45522800-45534600	Weak transcription	Left Ventricle	heart
33	chr14:45524200-45537600	Weak transcription	Brain Germinal Matrix	brain
34	chr14:45524200-45552600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr14:45524600-45545200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr14:45524600-45545200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:45524600-45552400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr14:45524600-45552600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:45524800-45538800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr14:45524800-45541000	Weak transcription	Brain Substantia Nigra	brain
41	chr14:45524800-45541200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr14:45524800-45541600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:45524800-45542400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:45524800-45542400	Weak transcription	Fetal Thymus	thymus
45	chr14:45524800-45542400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr14:45524800-45543000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr14:45524800-45544400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:45524800-45551800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr14:45524800-45552400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr14:45524800-45552400	Weak transcription	Dnd41	blood

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