Variant report

Variant	rs73354080
Chromosome Location	chr7:63955968-63955969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:63952467..63955112-chr7:63955599..63957119,2	MCF-7	breast:
2	chr7:63949640..63951193-chr7:63953673..63956399,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10274363	1.00[AMR][1000 genomes]
rs55940481	1.00[AMR][1000 genomes]
rs56143486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56157681	1.00[AMR][1000 genomes]
rs56162720	1.00[AMR][1000 genomes]
rs56287481	1.00[AMR][1000 genomes]
rs57330677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57375223	1.00[AMR][1000 genomes]
rs57473659	1.00[AMR][1000 genomes]
rs59264435	1.00[AMR][1000 genomes]
rs59764702	1.00[AMR][1000 genomes]
rs60080240	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60159065	1.00[AMR][1000 genomes]
rs60978341	1.00[AMR][1000 genomes]
rs61158282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61695131	1.00[AMR][1000 genomes]
rs73354015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354016	1.00[AMR][1000 genomes]
rs73354041	1.00[AMR][1000 genomes]
rs73354062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73354101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73355725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357504	1.00[AMR][1000 genomes]
rs73357505	1.00[AMR][1000 genomes]
rs73357549	1.00[AMR][1000 genomes]
rs73359824	1.00[AMR][1000 genomes]
rs73359834	1.00[AMR][1000 genomes]
rs73359871	1.00[AMR][1000 genomes]
rs73359872	1.00[AMR][1000 genomes]
rs73359881	1.00[AMR][1000 genomes]
rs73359885	1.00[AMR][1000 genomes]
rs73698655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698673	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701140	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888255	chr7:63175168-63990100	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv888259	chr7:63363001-64009193	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv1016466	chr7:63438466-63969492	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv429759	chr7:63662150-64110550	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv429760	chr7:63687850-64110550	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
7	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	nsv429761	chr7:63747498-64096138	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
10	nsv429762	chr7:63790450-64110550	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	nsv1031703	chr7:63839601-64225952	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
13	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
14	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
15	nsv1019403	chr7:63913361-63962134	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv2761104	chr7:63932053-63959013	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63955200-63956000	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr7:63955200-63956000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:63955200-63956000	Active TSS	Brain Anterior Caudate	brain
4	chr7:63955200-63956000	Active TSS	Brain Cingulate Gyrus	brain
5	chr7:63955200-63956000	Active TSS	Brain Hippocampus Middle	brain
6	chr7:63955200-63956000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
7	chr7:63955200-63956000	Enhancers	Fetal Heart	heart
8	chr7:63955200-63956200	Active TSS	Brain Substantia Nigra	brain
9	chr7:63955200-63956200	Active TSS	Ovary	ovary
10	chr7:63955200-63956400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:63955200-63956400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:63955200-63956400	Active TSS	Osteobl	bone
13	chr7:63955400-63956000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:63955400-63956000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:63955400-63956000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:63955400-63956000	Active TSS	Aorta	Aorta
17	chr7:63955400-63956000	Active TSS	Colon Smooth Muscle	Colon
18	chr7:63955400-63956200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr7:63955400-63956200	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr7:63955800-63956000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:63955800-63956000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:63955800-63956000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr7:63955800-63956000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
24	chr7:63955800-63956000	Flanking Active TSS	Stomach Smooth Muscle	stomach

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