Variant report
| Variant | rs73355948 |
|---|---|
| Chromosome Location | chr12:75016871-75016872 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:74930320..74932189-chr12:75016194..75018490,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253719 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10506698 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1353157 | 1.00[ASN][1000 genomes] |
| rs17113906 | 1.00[ASN][1000 genomes] |
| rs17114035 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17183486 | 1.00[ASN][1000 genomes] |
| rs17183685 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17786699 | 1.00[ASN][1000 genomes] |
| rs17787103 | 1.00[ASN][1000 genomes] |
| rs17787309 | 1.00[ASN][1000 genomes] |
| rs2048183 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2048184 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2661717 | 0.84[EUR][1000 genomes] |
| rs56147955 | 1.00[ASN][1000 genomes] |
| rs57483936 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58384746 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7295394 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73355907 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73355924 | 0.82[AFR][1000 genomes] |
| rs73355995 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74106016 | 0.92[AFR][1000 genomes] |
| rs74106043 | 0.83[AFR][1000 genomes] |
| rs74106044 | 0.83[AFR][1000 genomes] |
| rs74106045 | 0.82[AFR][1000 genomes] |
| rs74106046 | 0.82[AFR][1000 genomes] |
| rs74106048 | 0.82[AFR][1000 genomes] |
| rs7956761 | 0.84[AFR][1000 genomes] |
| rs7962067 | 1.00[ASN][1000 genomes] |
| rs7965242 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7967033 | 1.00[ASN][1000 genomes] |
| rs7968457 | 0.92[AFR][1000 genomes] |
| rs822801 | 0.84[EUR][1000 genomes] |
| rs822802 | 0.84[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:75015000-75017800 | Weak transcription | Stomach Mucosa | stomach |
