Variant report

Variant	rs73356159
Chromosome Location	chr12:75874937-75874938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr12:75874217-75874992	MCF10A-Er-Src	breast:	n/a	n/a
2	WRNIP1	chr12:75874413-75875765	GM12878	blood:	n/a	n/a
3	POLR2A	chr12:75873773-75875900	GM18505	blood:	n/a	n/a
4	RCOR1	chr12:75873963-75875530	GM12878	blood:	n/a	n/a
5	POLR2A	chr12:75874369-75875903	NB4	blood:	n/a	n/a
6	PML	chr12:75873845-75875194	GM12878	blood:	n/a	n/a
7	POLR2A	chr12:75873454-75877588	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr12:75874430-75875879	GM12878	blood:	n/a	n/a
9	MAX	chr12:75874253-75875738	NB4	blood:	n/a	n/a
10	MAX	chr12:75874224-75875140	A549	lung:	n/a	n/a
11	TBP	chr12:75873952-75876024	GM12878	blood:	n/a	n/a
12	POLR2A	chr12:75874328-75875058	ProgFib	skin:	n/a	n/a
13	SPI1	chr12:75874888-75875190	K562	blood:	n/a	chr12:75875056-75875065 chr12:75875055-75875068
14	CREB1	chr12:75873912-75874981	GM12878	blood:	n/a	n/a
15	BCLAF1	chr12:75873883-75875174	GM12878	blood:	n/a	chr12:75875055-75875064
16	POLR2A	chr12:75873661-75875927	GM12878	blood:	n/a	n/a
17	SPI1	chr12:75874395-75875445	GM12878	blood:	n/a	chr12:75875056-75875065 chr12:75875055-75875068
18	MAX	chr12:75874326-75874982	A549	lung:	n/a	n/a
19	RUNX3	chr12:75873742-75875506	GM12878	blood:	n/a	n/a
20	POLR2A	chr12:75874163-75875374	HUVEC	blood vessel:	n/a	n/a
21	EP300	chr12:75873879-75875869	GM12878	blood:	n/a	chr12:75875056-75875065 chr12:75874377-75874386 chr12:75875599-75875609 chr12:75875083-75875097
22	POLR2A	chr12:75874335-75875181	GM19193	blood:	n/a	n/a
23	POLR2A	chr12:75874343-75875146	GM12892	blood:	n/a	n/a
24	SPI1	chr12:75874843-75875234	GM12878	blood:	n/a	chr12:75875056-75875065 chr12:75875055-75875068
25	POLR2A	chr12:75874305-75875875	GM12878	blood:	n/a	n/a
26	MTA3	chr12:75873464-75876093	GM12878	blood:	n/a	n/a
27	POLR2A	chr12:75874371-75875225	HUVEC	blood vessel:	n/a	n/a
28	SPI1	chr12:75874911-75875309	HL-60	blood:	n/a	chr12:75875056-75875065 chr12:75875055-75875068
29	CUX1	chr12:75874558-75875197	GM12878	blood:	n/a	n/a
30	CCNT2	chr12:75874519-75875022	K562	blood:	n/a	n/a
31	MYC	chr12:75874284-75875142	MCF10A-Er-Src	breast:	n/a	n/a
32	MYC	chr12:75874250-75875428	NB4	blood:	n/a	n/a
33	POLR2A	chr12:75874253-75875040	GM12892	blood:	n/a	n/a
34	SPI1	chr12:75874833-75875240	GM12891	blood:	n/a	chr12:75875056-75875065 chr12:75875055-75875068
35	SPI1	chr12:75874867-75875290	GM12891	blood:	n/a	chr12:75875056-75875065 chr12:75875055-75875068
36	POLR2A	chr12:75874286-75875117	GM12891	blood:	n/a	n/a
37	CHD1	chr12:75873981-75875286	GM12878	blood:	n/a	n/a
38	SMC3	chr12:75874160-75875240	GM12878	blood:	n/a	n/a
39	RUNX3	chr12:75874837-75875480	GM12878	blood:	n/a	n/a
40	POLR2A	chr12:75874116-75875009	U87	brain:	n/a	n/a
41	MXI1	chr12:75873982-75875800	GM12878	blood:	n/a	n/a
42	POLR2A	chr12:75873874-75875313	GM18951	blood:	n/a	n/a
43	NFIC	chr12:75873747-75875197	GM12878	blood:	n/a	n/a
44	POLR2A	chr12:75873958-75875991	GM19099	blood:	n/a	n/a
45	POLR2A	chr12:75873593-75876813	IMR90	lung:	n/a	n/a
46	SPI1	chr12:75874284-75875448	HL-60	blood:	n/a	chr12:75875056-75875065 chr12:75875055-75875068
47	POLR2A	chr12:75873977-75875083	GM15510	blood:	n/a	n/a
48	MAFK	chr12:75874289-75875353	IMR90	lung:	n/a	n/a
49	PBX3	chr12:75874287-75875115	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr12:75874306-75874968	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
GLIPR1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73356178	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492067	chr12:75415458-76077537	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1036987	chr12:75415532-76101559	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv899313	chr12:75715330-76057811	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428592	chr12:75766619-75936721	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75868400-75875600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:75873400-75878800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:75873600-75875000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr12:75873600-75875000	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr12:75873600-75875000	Active TSS	A549	lung
6	chr12:75873600-75875400	Active TSS	Stomach Smooth Muscle	stomach
7	chr12:75873600-75875600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr12:75873600-75877000	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr12:75873600-75878200	Active TSS	Aorta	Aorta
10	chr12:75873600-75878200	Flanking Active TSS	Dnd41	blood
11	chr12:75873800-75875200	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr12:75873800-75875200	Active TSS	HSMMtube	muscle
13	chr12:75873800-75875400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:75873800-75875400	Active TSS	Duodenum Mucosa	Duodenum
15	chr12:75873800-75875600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:75873800-75875600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:75873800-75875600	Active TSS	Brain Cingulate Gyrus	brain
18	chr12:75873800-75875600	Weak transcription	Lung	lung
19	chr12:75873800-75875600	Active TSS	Ovary	ovary
20	chr12:75873800-75875800	Active TSS	Brain Angular Gyrus	brain
21	chr12:75873800-75876000	Active TSS	Osteobl	bone
22	chr12:75873800-75876200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr12:75873800-75876200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr12:75873800-75876200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr12:75873800-75876200	Active TSS	NHLF	lung
26	chr12:75873800-75876400	Active TSS	Psoas Muscle	Psoas
27	chr12:75873800-75876600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr12:75873800-75876800	Active TSS	Adipose Nuclei	Adipose
29	chr12:75873800-75878200	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr12:75873800-75879000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr12:75874000-75875000	Active TSS	Stomach Mucosa	stomach
32	chr12:75874000-75875200	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr12:75874000-75875200	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr12:75874000-75875400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr12:75874000-75875400	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr12:75874000-75875400	Active TSS	Fetal Kidney	kidney
37	chr12:75874000-75875600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:75874000-75875600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr12:75874000-75875600	Active TSS	Colonic Mucosa	Colon
40	chr12:75874000-75875600	Active TSS	Fetal Lung	lung
41	chr12:75874000-75875600	Active TSS	Left Ventricle	heart
42	chr12:75874000-75875600	Active TSS	Right Ventricle	heart
43	chr12:75874000-75875600	Active TSS	NHDF-Ad	bronchial
44	chr12:75874000-75875800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:75874000-75875800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr12:75874000-75875800	Active TSS	Fetal Muscle Trunk	muscle
47	chr12:75874000-75875800	Active TSS	HMEC	breast
48	chr12:75874000-75876000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr12:75874000-75876000	Active TSS	GM12878-XiMat	blood
50	chr12:75874000-75876000	Active TSS	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links