Variant report

Variant	rs73356688
Chromosome Location	chr7:38524875-38524876
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17171344	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17171348	1.00[AMR][1000 genomes]
rs58110874	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60918146	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6462843	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6955238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6955569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6969918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352622	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352635	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73352664	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73356685	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
2	chr7:38502800-38533800	Weak transcription	Aorta	Aorta
3	chr7:38524000-38543400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:38524200-38545000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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