Variant report

Variant	rs73357796
Chromosome Location	chr10:91020490-91020491
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91019602..91020678-chr10:91148799..91149709,3	MCF-7	breast:
2	chr10:91019777..91020866-chr10:91128531..91129985,10	MCF-7	breast:
3	chr10:91019711..91020808-chr10:91128397..91129939,7	MCF-7	breast:
4	chr10:91019839..91020750-chr10:91128976..91129904,3	K562	blood:
5	chr10:91020387..91022060-chr10:91024157..91025732,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266769	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58158399	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60230809	0.83[AFR][1000 genomes]
rs73357798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73359609	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv895882	chr10:91002927-91021645	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91011400-91021600	Weak transcription	Fetal Brain Male	brain
2	chr10:91012000-91021800	Weak transcription	Right Atrium	heart
3	chr10:91014400-91023400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:91018600-91020800	Enhancers	Fetal Heart	heart
5	chr10:91019600-91021000	Enhancers	Brain Hippocampus Middle	brain
6	chr10:91019800-91022400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:91020000-91020600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr10:91020000-91020600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:91020000-91020600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:91020000-91020600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:91020000-91020600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:91020000-91020600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr10:91020000-91020600	Enhancers	Fetal Thymus	thymus
14	chr10:91020000-91020600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:91020000-91020600	Enhancers	Thymus	Thymus
16	chr10:91020000-91020800	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:91020000-91020800	Enhancers	Liver	Liver
18	chr10:91020000-91020800	Genic enhancers	Fetal Intestine Small	intestine
19	chr10:91020000-91020800	Enhancers	Dnd41	blood
20	chr10:91020000-91021000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:91020000-91021000	Enhancers	Brain Anterior Caudate	brain
22	chr10:91020000-91021000	Enhancers	Fetal Lung	lung
23	chr10:91020000-91021200	Enhancers	Brain Substantia Nigra	brain
24	chr10:91020000-91022000	Enhancers	Hela-S3	cervix
25	chr10:91020000-91023200	Enhancers	HMEC	breast
26	chr10:91020000-91023600	Enhancers	Brain Angular Gyrus	brain
27	chr10:91020000-91023600	Enhancers	Brain Cingulate Gyrus	brain
28	chr10:91020000-91023600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr10:91020000-91023600	Enhancers	NHEK	skin
30	chr10:91020000-91024000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:91020200-91020600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr10:91020200-91020600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr10:91020200-91020600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr10:91020200-91020600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:91020200-91020600	Enhancers	Colonic Mucosa	Colon
36	chr10:91020200-91020600	Enhancers	Pancreas	Pancrea
37	chr10:91020200-91020600	Enhancers	Spleen	Spleen
38	chr10:91020200-91020800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr10:91020200-91020800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:91020200-91020800	Enhancers	Fetal Muscle Trunk	muscle
41	chr10:91020200-91020800	Enhancers	Fetal Muscle Leg	muscle
42	chr10:91020200-91021000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr10:91020200-91021000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr10:91020200-91021000	Enhancers	Placenta	Placenta
45	chr10:91020200-91022400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:91020200-91023000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:91020200-91023000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:91020200-91023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:91020200-91024200	Enhancers	Placenta Amnion	Placenta Amnion
50	chr10:91020400-91020600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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