Variant report

Variant	rs73358999
Chromosome Location	chr10:112575646-112575647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112567996..112570868-chr10:112574019..112576612,3	K562	blood:
2	chr10:112566469..112571087-chr10:112574225..112578785,5	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60838227	0.87[AFR][1000 genomes]
rs73358998	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
2	chr10:112562800-112576800	Weak transcription	Psoas Muscle	Psoas
3	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:112564200-112579200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:112565400-112576000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:112567400-112576200	Weak transcription	HSMMtube	muscle
7	chr10:112568400-112575800	Weak transcription	Gastric	stomach
8	chr10:112568600-112577400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:112569000-112578000	Weak transcription	Colonic Mucosa	Colon
10	chr10:112570200-112576200	Weak transcription	Pancreas	Pancrea
11	chr10:112572200-112577600	Weak transcription	Adipose Nuclei	Adipose
12	chr10:112572400-112575800	Enhancers	Fetal Intestine Large	intestine
13	chr10:112572400-112575800	Enhancers	Fetal Intestine Small	intestine
14	chr10:112572400-112575800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:112572400-112575800	Weak transcription	Right Atrium	heart
16	chr10:112572600-112575800	Weak transcription	Lung	lung
17	chr10:112572600-112576800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:112572600-112593800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:112572800-112577800	Genic enhancers	Fetal Heart	heart
20	chr10:112572800-112581400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:112572800-112582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:112573000-112578800	Enhancers	Primary T cells from cord blood	blood
23	chr10:112573200-112577400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:112573200-112578200	Weak transcription	Placenta	Placenta
25	chr10:112573400-112580800	Weak transcription	K562	blood
26	chr10:112574000-112576200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:112574000-112578000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:112574200-112576600	Weak transcription	Stomach Mucosa	stomach
29	chr10:112574400-112576400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:112574400-112578400	Weak transcription	Small Intestine	intestine
31	chr10:112574600-112578200	Weak transcription	Liver	Liver
32	chr10:112574600-112579000	Enhancers	GM12878-XiMat	blood
33	chr10:112574800-112579200	Enhancers	Fetal Thymus	thymus
34	chr10:112575000-112576200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr10:112575000-112577400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:112575000-112579800	Enhancers	Stomach Smooth Muscle	stomach
37	chr10:112575200-112576800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:112575200-112577200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr10:112575200-112577800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr10:112575200-112577800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr10:112575200-112577800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr10:112575200-112577800	Enhancers	Thymus	Thymus
43	chr10:112575200-112582400	Enhancers	Esophagus	oesophagus
44	chr10:112575400-112576000	Enhancers	Fetal Stomach	stomach
45	chr10:112575400-112579400	Genic enhancers	Left Ventricle	heart
46	chr10:112575400-112581400	Enhancers	Fetal Muscle Leg	muscle
47	chr10:112575600-112576000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr10:112575600-112577000	Weak transcription	Colon Smooth Muscle	Colon
49	chr10:112575600-112577600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:112575600-112577800	Genic enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links