Variant report

Variant	rs73359303
Chromosome Location	chr21:17174560-17174561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17149058..17152250-chr21:17172781..17176398,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11909481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11909953	1.00[EUR][1000 genomes]
rs7278699	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73346759	0.83[AMR][1000 genomes]
rs8132755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1063035	chr21:17154222-17224344	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17151800-17191000	Weak transcription	NH-A	brain
2	chr21:17155000-17179800	Weak transcription	Spleen	Spleen
3	chr21:17155000-17187400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr21:17155000-17188600	Weak transcription	HepG2	liver
5	chr21:17155200-17177000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr21:17155200-17177000	Weak transcription	Brain Anterior Caudate	brain
7	chr21:17155200-17177000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr21:17155200-17177000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr21:17155200-17179200	Weak transcription	Fetal Intestine Large	intestine
10	chr21:17155200-17179200	Weak transcription	Left Ventricle	heart
11	chr21:17155200-17181200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr21:17155200-17181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr21:17155200-17181400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr21:17155200-17182200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr21:17155200-17183200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr21:17155200-17183200	Weak transcription	Placenta	Placenta
17	chr21:17155200-17184600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr21:17155200-17186200	Weak transcription	Fetal Thymus	thymus
19	chr21:17155200-17187200	Weak transcription	Thymus	Thymus
20	chr21:17155200-17187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr21:17155200-17187800	Weak transcription	Fetal Kidney	kidney
22	chr21:17155200-17189800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr21:17155200-17197600	Weak transcription	Fetal Heart	heart
24	chr21:17155200-17199200	Weak transcription	Right Ventricle	heart
25	chr21:17155200-17203800	Weak transcription	Colon Smooth Muscle	Colon
26	chr21:17155200-17209800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr21:17155200-17252800	Weak transcription	Fetal Brain Male	brain
28	chr21:17155600-17176800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr21:17155600-17179200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr21:17155600-17182000	Weak transcription	Fetal Lung	lung
31	chr21:17155800-17176800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr21:17155800-17177200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr21:17155800-17185400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr21:17155800-17186200	Weak transcription	Fetal Muscle Leg	muscle
35	chr21:17155800-17187200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr21:17156000-17176200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr21:17157000-17178400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr21:17161400-17187200	Weak transcription	Aorta	Aorta
39	chr21:17161600-17187400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr21:17162000-17177200	Weak transcription	NHDF-Ad	bronchial
41	chr21:17162000-17182000	Weak transcription	Osteobl	bone
42	chr21:17162400-17179200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr21:17162800-17179800	Weak transcription	HSMMtube	muscle
44	chr21:17164600-17176800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr21:17164600-17183400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr21:17166200-17177000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr21:17167000-17176800	Weak transcription	Psoas Muscle	Psoas
48	chr21:17167000-17181600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr21:17168200-17181000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr21:17168800-17181200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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