Variant report

Variant	rs73360293
Chromosome Location	chr6:5638920-5638921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs59669264	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59860398	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59995091	1.00[AMR][1000 genomes]
rs60484538	1.00[AMR][1000 genomes]
rs73358247	1.00[AMR][1000 genomes]
rs73358273	1.00[AMR][1000 genomes]
rs73360236	1.00[AMR][1000 genomes]
rs73360252	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360256	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360257	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360259	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360263	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360275	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360291	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360292	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73360296	1.00[AMR][1000 genomes]
rs73360299	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916361	chr6:5315853-5695486	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv600887	chr6:5545046-5694713	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1016905	chr6:5566364-5639167	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5577400-5639800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:5581000-5640400	Weak transcription	Gastric	stomach
3	chr6:5610600-5641000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5612600-5640000	Weak transcription	Fetal Stomach	stomach
5	chr6:5613200-5640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:5614400-5639000	Weak transcription	Lung	lung
7	chr6:5614600-5640000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:5614600-5640400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:5620000-5640400	Weak transcription	Spleen	Spleen
10	chr6:5627400-5640000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:5627400-5640400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:5627800-5639800	Weak transcription	Thymus	Thymus
13	chr6:5627800-5640400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:5627800-5640800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:5628200-5639600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:5628200-5639800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr6:5628200-5640400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:5628600-5640200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:5629200-5639000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:5629200-5639800	Weak transcription	Aorta	Aorta
21	chr6:5629200-5640200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:5629200-5645600	Weak transcription	Right Ventricle	heart
23	chr6:5629400-5640000	Weak transcription	Primary T cells from cord blood	blood
24	chr6:5630600-5639600	Weak transcription	Primary B cells from cord blood	blood
25	chr6:5633400-5640200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:5635000-5645000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:5635200-5644800	Weak transcription	Left Ventricle	heart
28	chr6:5635400-5654000	Weak transcription	Right Atrium	heart
29	chr6:5636800-5639000	Weak transcription	Ovary	ovary
30	chr6:5636800-5640200	Weak transcription	Pancreas	Pancrea
31	chr6:5636800-5642800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:5638200-5639400	Enhancers	Fetal Heart	heart
33	chr6:5638200-5639600	Enhancers	Brain Angular Gyrus	brain
34	chr6:5638200-5639600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:5638200-5640000	Enhancers	Brain Substantia Nigra	brain
36	chr6:5638600-5639400	Enhancers	Brain Hippocampus Middle	brain
37	chr6:5638800-5639200	Enhancers	Fetal Muscle Trunk	muscle
38	chr6:5638800-5639600	Enhancers	Cortex derived primary cultured neurospheres	brain

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