Variant report

Variant	rs73360369
Chromosome Location	chr7:56024096-56024097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:56022593..56025153-chr7:56159111..56161145,2	K562	blood:
2	chr7:56022690..56025113-chr7:56180352..56182821,2	K562	blood:
3	chr7:56022715..56025169-chr7:56117660..56119960,2	MCF-7	breast:
4	chr7:56023602..56026001-chr7:56031001..56033765,3	MCF-7	breast:
5	chr7:56018536..56023436-chr7:56023593..56027250,7	K562	blood:

Variant related genes	Relation type
ENSG00000146729	Chromatin interaction
ENSG00000146731	Chromatin interaction
ENSG00000164776	Chromatin interaction
ENSG00000146733	Chromatin interaction
ENSG00000239789	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11489729	1.00[ASN][1000 genomes]
rs13223053	0.81[AFR][1000 genomes]
rs17172505	0.92[ASN][1000 genomes]
rs56231305	1.00[ASN][1000 genomes]
rs57580348	1.00[ASN][1000 genomes]
rs60007968	1.00[ASN][1000 genomes]
rs61193865	1.00[ASN][1000 genomes]
rs73358448	0.85[ASN][1000 genomes]
rs73358466	1.00[ASN][1000 genomes]
rs73358468	1.00[ASN][1000 genomes]
rs73360334	1.00[ASN][1000 genomes]
rs73360352	1.00[ASN][1000 genomes]
rs73360362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73360364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73360377	1.00[ASN][1000 genomes]
rs73698917	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73698918	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73698919	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73698972	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73698975	1.00[ASN][1000 genomes]
rs73698976	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
9	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
11	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
12	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
13	nsv1034826	chr7:55962159-56092835	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv1033225	chr7:55962159-56094540	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56020200-56026000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:56020200-56031200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:56020200-56031400	Weak transcription	Small Intestine	intestine
4	chr7:56020200-56031600	Weak transcription	Aorta	Aorta
5	chr7:56020200-56031800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:56020400-56028000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:56020400-56031000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:56020400-56031200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:56020400-56031200	Weak transcription	NHDF-Ad	bronchial
10	chr7:56020400-56031400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:56020400-56031400	Weak transcription	Colonic Mucosa	Colon
12	chr7:56020400-56031400	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:56020400-56031400	Weak transcription	Esophagus	oesophagus
14	chr7:56020400-56031400	Weak transcription	Fetal Kidney	kidney
15	chr7:56020400-56031600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:56020400-56031600	Weak transcription	Psoas Muscle	Psoas
17	chr7:56020400-56031600	Weak transcription	HUVEC	blood vessel
18	chr7:56020400-56031800	Weak transcription	HSMMtube	muscle
19	chr7:56020400-56032600	Weak transcription	Fetal Lung	lung
20	chr7:56020600-56027800	Weak transcription	Thymus	Thymus
21	chr7:56020600-56030200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:56020600-56031400	Weak transcription	Primary B cells from cord blood	blood
23	chr7:56020600-56031600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:56020600-56031800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:56020800-56024200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:56020800-56024200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:56020800-56025000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr7:56020800-56026600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:56020800-56031000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:56020800-56031000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr7:56021000-56024200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:56021000-56024200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr7:56021000-56024200	Strong transcription	Fetal Muscle Leg	muscle
34	chr7:56021000-56024800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:56021000-56025600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:56021000-56031000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr7:56021000-56031000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr7:56021000-56031400	Weak transcription	Fetal Heart	heart
39	chr7:56021200-56024800	Strong transcription	Fetal Stomach	stomach
40	chr7:56021200-56025400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:56021200-56025600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:56021200-56031200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:56021200-56031400	Weak transcription	Fetal Brain Male	brain
44	chr7:56021600-56024200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:56021800-56024400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:56021800-56024400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:56021800-56027200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr7:56021800-56031400	Weak transcription	Pancreas	Pancrea
49	chr7:56021800-56031600	Weak transcription	NHLF	lung
50	chr7:56022000-56024400	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links