Variant report

Variant	rs73361071
Chromosome Location	chr14:105864163-105864164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr14:105863400-105866124	MCF-7	breast:	n/a	chr14:105865583-105865594 chr14:105865584-105865594 chr14:105865585-105865592 chr14:105865584-105865593 chr14:105864860-105864870
2	POLR2A	chr14:105863106-105865466	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr14:105864122-105864244	A549	lung:	n/a	n/a
4	ESRRA	chr14:105863902-105865546	GM12878	blood:	n/a	chr14:105864620-105864633 chr14:105865415-105865428 chr14:105865507-105865519 chr14:105865522-105865531
5	MAX	chr14:105863967-105865593	ECC-1	luminal epithelium:	n/a	chr14:105865585-105865592 chr14:105865584-105865593 chr14:105864860-105864870
6	POLR2A	chr14:105863634-105865983	K562	blood:	n/a	n/a
7	POLR2A	chr14:105864135-105865486	GM12878	blood:	n/a	n/a
8	MYC	chr14:105864157-105865593	NB4	blood:	n/a	chr14:105865585-105865592 chr14:105865584-105865593 chr14:105864860-105864870
9	MAX	chr14:105864150-105865404	Hela-S3	cervix:	n/a	chr14:105864860-105864870
10	ELK1	chr14:105864101-105864170	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr14:105864107-105865768	HUVEC	blood vessel:	n/a	n/a
12	POLR2A	chr14:105863619-105864281	MCF-7	breast:	n/a	n/a
13	HCFC1	chr14:105864151-105865089	K562	blood:	n/a	n/a
14	CTCF	chr14:105864080-105864230	GM12870	blood:	n/a	n/a
15	POLR2A	chr14:105863611-105865884	ECC-1	luminal epithelium:	n/a	n/a
16	POLR2A	chr14:105863881-105867027	GM12878	blood:	n/a	n/a
17	POLR2A	chr14:105864159-105866072	GM12878	blood:	n/a	n/a
18	POLR2A	chr14:105863588-105865626	MCF-7	breast:	n/a	n/a
19	POLR2A	chr14:105864042-105865460	GM12892	blood:	n/a	n/a
20	CTCF	chr14:105864080-105864230	HMF	breast:	n/a	n/a
21	POLR2A	chr14:105864041-105866212	K562	blood:	n/a	n/a
22	TAL1	chr14:105864095-105864347	K562	blood:	n/a	n/a
23	POLR2A	chr14:105863494-105865449	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr14:105863862-105865494	GM19193	blood:	n/a	n/a
25	CTCF	chr14:105864120-105864270	HBMEC	blood vessel:	n/a	n/a
26	NR2F2	chr14:105864050-105865906	MCF-7	breast:	n/a	n/a
27	E2F6	chr14:105864060-105865638	H1-hESC	embryonic stem cell:	n/a	chr14:105864548-105864559 chr14:105864829-105864839 chr14:105864862-105864871 chr14:105865038-105865047 chr14:105865133-105865142 chr14:105864827-105864836
28	MTA3	chr14:105863697-105865597	GM12878	blood:	n/a	n/a
29	NRF1	chr14:105864150-105865073	SK-N-SH	brain:	n/a	chr14:105864849-105864856 chr14:105864485-105864494 chr14:105864826-105864837 chr14:105864862-105864871 chr14:105865038-105865047 chr14:105864826-105864840
30	MAX	chr14:105864028-105865925	HCT-116	colon:	n/a	chr14:105865583-105865594 chr14:105865584-105865594 chr14:105865585-105865592 chr14:105865584-105865593 chr14:105864860-105864870
31	JUN	chr14:105864011-105865156	K562	blood:	n/a	chr14:105865040-105865049 chr14:105865039-105865048 chr14:105865134-105865143 chr14:105865043-105865052
32	POLR2A	chr14:105863953-105865573	GM18951	blood:	n/a	n/a
33	MAX	chr14:105864104-105865503	ECC-1	luminal epithelium:	n/a	chr14:105864860-105864870
34	POLR2A	chr14:105863825-105865981	GM12892	blood:	n/a	n/a
35	MAX	chr14:105864128-105865744	NB4	blood:	n/a	chr14:105865583-105865594 chr14:105865584-105865594 chr14:105865585-105865592 chr14:105865584-105865593 chr14:105864860-105864870
36	POLR2A	chr14:105863072-105864379	H1-neurons	neurons:	n/a	n/a
37	JUND	chr14:105863803-105865889	MCF-7	breast:	n/a	chr14:105865040-105865049 chr14:105865039-105865048 chr14:105865134-105865143 chr14:105865043-105865052
38	POLR2A	chr14:105863834-105865835	GM18505	blood:	n/a	n/a
39	POLR2A	chr14:105864100-105865488	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr14:105864107-105864322	HCT-116	colon:	n/a	n/a
41	HCFC1	chr14:105863858-105865406	Hela-S3	cervix:	n/a	n/a
42	PML	chr14:105864148-105865652	GM12878	blood:	n/a	n/a
43	MYC	chr14:105864135-105864888	MCF10A-Er-Src	breast:	n/a	chr14:105864860-105864870
44	POLR2A	chr14:105863886-105865575	PANC-1	pancreas:	n/a	n/a
45	MAZ	chr14:105864099-105865638	IMR90	lung:	n/a	chr14:105865583-105865594 chr14:105865584-105865594 chr14:105865585-105865592 chr14:105865584-105865593 chr14:105864860-105864870
46	POLR2A	chr14:105864090-105865675	GM12891	blood:	n/a	n/a
47	POLR2A	chr14:105862983-105866594	HepG2	liver:	n/a	n/a
48	POLR2A	chr14:105863897-105866966	Raji	blood:	n/a	n/a
49	MYC	chr14:105864021-105865557	K562	blood:	n/a	chr14:105864860-105864870
50	E2F6	chr14:105864005-105865956	K562	blood:	n/a	chr14:105864548-105864559 chr14:105864829-105864839 chr14:105864862-105864871 chr14:105865038-105865047 chr14:105865133-105865142 chr14:105864827-105864836

No.	Distal block	Cell Line	Cell type
1	chr14:105791422..105793957-chr14:105861992..105864846,2	K562	blood:
2	chr14:105863267..105865321-chr7:155086805..155089493,2	MCF-7	breast:
3	chr14:105863162..105866503-chr14:105955373..105958550,4	MCF-7	breast:
4	chr14:105862831..105864534-chr14:105950301..105953240,2	MCF-7	breast:
5	chr14:105863668..105866126-chr14:105933833..105938378,4	MCF-7	breast:
6	chr14:105857888..105860115-chr14:105862666..105865103,4	K562	blood:
7	chr14:105863746..105866749-chr17:41464656..41467780,5	K562	blood:
8	chr14:105863414..105866995-chr14:105913665..105917421,4	MCF-7	breast:
9	chr14:105839406..105843538-chr14:105863279..105866861,6	MCF-7	breast:
10	chr14:105862822..105868581-chr14:105954164..105958464,7	MCF-7	breast:
11	chr14:105864036..105864877-chr3:27525398..27526277,2	NB4	blood:
12	chr14:105863766..105866769-chr17:41464654..41467729,6	MCF-7	breast:
13	chr14:105863063..105864847-chr14:105886913..105889442,2	K562	blood:
14	chr14:105862050..105866153-chr14:105956114..105958822,3	K562	blood:
15	chr14:105864068..105864754-chr2:122454619..122455119,2	NB4	blood:
16	chr14:105849372..105852249-chr14:105863098..105866090,2	K562	blood:
17	chr14:105863237..105864780-chr14:105991374..105993761,2	MCF-7	breast:
18	chr14:105861905..105865753-chr14:105884230..105887422,5	K562	blood:
19	chr14:105441981..105444790-chr14:105863308..105866164,2	MCF-7	breast:
20	chr14:105863749..105866749-chr3:73158573..73161478,4	K562	blood:
21	chr14:105863746..105866766-chr17:41464694..41467780,6	K562	blood:
22	chr14:105861825..105867195-chr14:105938738..105943218,7	MCF-7	breast:

Variant related genes	Relation type
TEX22	TF binding region
ENSG00000273117	Chromatin interaction
ENSG00000184986	Chromatin interaction
ENSG00000182809	Chromatin interaction
ENSG00000179364	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000257341	Chromatin interaction
ENSG00000033867	Chromatin interaction
ENSG00000185567	Chromatin interaction
ENSG00000182979	Chromatin interaction
ENSG00000186480	Chromatin interaction
ENSG00000213145	Chromatin interaction
ENSG00000251602	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000242085	Chromatin interaction
ENSG00000185347	Chromatin interaction
ENSG00000257270	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11847028	0.81[AMR][1000 genomes]
rs28529463	0.81[AMR][1000 genomes]
rs28541433	0.81[AMR][1000 genomes]
rs28649056	0.89[AMR][1000 genomes]
rs73361094	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105848000-105864200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:105852200-105864200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:105852400-105864200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:105853800-105864600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:105854400-105864200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:105854400-105864200	Weak transcription	NHLF	lung
7	chr14:105859000-105864200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:105859800-105864200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:105860000-105864200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:105861000-105864200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:105861000-105864200	Weak transcription	Aorta	Aorta
12	chr14:105861000-105864600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:105862000-105864200	Enhancers	Fetal Muscle Leg	muscle
14	chr14:105862000-105864400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr14:105862400-105864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:105862400-105864200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr14:105862600-105864200	Enhancers	HUVEC	blood vessel
18	chr14:105863000-105864400	Enhancers	Spleen	Spleen
19	chr14:105863200-105864200	Enhancers	Primary B cells from peripheral blood	blood
20	chr14:105863200-105864200	Enhancers	Lung	lung
21	chr14:105863200-105864200	Enhancers	Right Ventricle	heart
22	chr14:105863200-105864200	Enhancers	HSMMtube	muscle
23	chr14:105863200-105864400	Enhancers	Primary hematopoietic stem cells	blood
24	chr14:105863200-105864400	Enhancers	Esophagus	oesophagus
25	chr14:105863400-105864200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:105863400-105864200	Enhancers	Hela-S3	cervix
27	chr14:105863400-105864200	Enhancers	K562	blood
28	chr14:105863600-105864200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:105863600-105864200	Enhancers	Primary T cells from cord blood	blood
30	chr14:105863600-105864200	Enhancers	Fetal Stomach	stomach
31	chr14:105863600-105864200	Enhancers	Pancreas	Pancrea
32	chr14:105863600-105864200	Enhancers	Right Atrium	heart
33	chr14:105863600-105864400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:105863600-105864400	Flanking Active TSS	Brain Germinal Matrix	brain
35	chr14:105863600-105864400	Enhancers	Fetal Heart	heart
36	chr14:105863600-105864600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:105863600-105865200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:105863800-105864200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:105863800-105864200	Enhancers	Primary B cells from cord blood	blood
40	chr14:105863800-105864200	Enhancers	Primary T cells fromperipheralblood	blood
41	chr14:105863800-105864200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr14:105863800-105864200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:105863800-105864200	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr14:105863800-105864200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:105863800-105864200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:105863800-105864200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr14:105863800-105864200	Enhancers	Fetal Kidney	kidney
48	chr14:105863800-105864200	Enhancers	Placenta	Placenta
49	chr14:105863800-105864200	Enhancers	Ovary	ovary
50	chr14:105863800-105864200	Enhancers	NHDF-Ad	bronchial

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