Variant report

Variant	rs73361792
Chromosome Location	chr21:40730470-40730471
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56666138	1.00[AMR][1000 genomes]
rs59618845	1.00[AMR][1000 genomes]
rs60835204	1.00[AMR][1000 genomes]
rs61056640	1.00[AMR][1000 genomes]
rs73355898	1.00[AMR][1000 genomes]
rs73357810	1.00[AMR][1000 genomes]
rs73357816	1.00[AMR][1000 genomes]
rs73357862	1.00[AMR][1000 genomes]
rs73357865	1.00[AMR][1000 genomes]
rs73357877	1.00[AMR][1000 genomes]
rs73357888	1.00[AMR][1000 genomes]
rs73357891	1.00[AMR][1000 genomes]
rs73357900	1.00[AMR][1000 genomes]
rs73359508	1.00[AMR][1000 genomes]
rs73359510	1.00[AMR][1000 genomes]
rs73361751	1.00[AMR][1000 genomes]
rs73361795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73361797	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364006	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364007	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364011	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364012	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364016	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364018	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364021	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364023	1.00[AMR][1000 genomes]
rs73364027	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367966	1.00[AMR][1000 genomes]
rs73367969	1.00[AMR][1000 genomes]
rs73367979	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913744	chr21:40670167-40757973	Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv1059420	chr21:40684295-40745952	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv1059868	chr21:40711535-41043291	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40730200-40730800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:40730200-40731000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr21:40730400-40731000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:40730400-40731600	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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