Variant report

Variant	rs7336202
Chromosome Location	chr13:95903704-95903705
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95898278..95901890-chr13:95902438..95906069,3	K562	blood:
2	chr13:95898930..95900924-chr13:95902230..95904877,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2027444	1.00[EUR][1000 genomes]
rs2389226	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2389227	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2389228	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4773861	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4773862	0.97[EUR][1000 genomes]
rs7320383	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7322029	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7329514	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7335275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7982955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8000333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9524866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9556467	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95861600-95906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr13:95879200-95907400	Weak transcription	Small Intestine	intestine
3	chr13:95879200-95914000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
5	chr13:95881600-95904000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:95884800-95906400	Weak transcription	Hela-S3	cervix
7	chr13:95887000-95918800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr13:95888000-95909000	Weak transcription	Fetal Stomach	stomach
9	chr13:95888400-95906800	Weak transcription	Gastric	stomach
10	chr13:95890000-95907600	Weak transcription	Colon Smooth Muscle	Colon
11	chr13:95890800-95906400	Weak transcription	Osteobl	bone
12	chr13:95891800-95908000	Weak transcription	Esophagus	oesophagus
13	chr13:95892600-95905400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr13:95893000-95905400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr13:95896200-95923400	Weak transcription	Ovary	ovary
16	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr13:95898800-95906200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:95898800-95906600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:95898800-95908000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr13:95898800-95919600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr13:95899000-95906000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr13:95899000-95910000	Weak transcription	Fetal Intestine Large	intestine
23	chr13:95899000-95919600	Weak transcription	Fetal Lung	lung
24	chr13:95899400-95907000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:95899800-95906000	Weak transcription	NHEK	skin
26	chr13:95899800-95919600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr13:95900000-95906200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr13:95900000-95906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:95900000-95906200	Weak transcription	NHDF-Ad	bronchial
30	chr13:95900000-95906200	Weak transcription	NHLF	lung
31	chr13:95900000-95907400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr13:95900000-95907600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr13:95900000-95908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr13:95900000-95910200	Weak transcription	Fetal Intestine Small	intestine
35	chr13:95900000-95918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr13:95900000-95918800	Weak transcription	Lung	lung
37	chr13:95900000-95919000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr13:95900000-95920000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr13:95900600-95906000	Weak transcription	HUVEC	blood vessel
40	chr13:95900600-95907000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:95901600-95903800	Enhancers	K562	blood
42	chr13:95902000-95903800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr13:95902200-95904800	Weak transcription	HepG2	liver
44	chr13:95903000-95904000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr13:95903200-95904200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr13:95903200-95904200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr13:95903400-95904000	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr13:95903600-95904200	Enhancers	A549	lung
49	chr13:95903600-95904400	Flanking Active TSS	GM12878-XiMat	blood
50	chr13:95903600-95904400	Enhancers	HSMMtube	muscle

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