Variant report

Variant	rs73362560
Chromosome Location	chr6:4804102-4804103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4774443..4775951-chr6:4803509..4806203,2	MCF-7	breast:
2	chr6:4777710..4780092-chr6:4801744..4804702,2	K562	blood:
3	chr6:4645018..4646864-chr6:4803237..4804893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236336	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1016877	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11967994	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11968021	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1265332	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1265333	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1265334	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1265335	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17138856	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs184588	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2179269	0.83[EUR][1000 genomes]
rs2179270	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs233476	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3748078	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61610972	0.87[EUR][1000 genomes]
rs62386574	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62386575	0.88[EUR][1000 genomes]
rs62386576	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62386577	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62386578	0.89[EUR][1000 genomes]
rs62386582	0.87[EUR][1000 genomes]
rs62386584	0.87[EUR][1000 genomes]
rs62386585	0.87[EUR][1000 genomes]
rs62386587	0.85[EUR][1000 genomes]
rs62386590	0.83[EUR][1000 genomes]
rs6910368	0.88[EUR][1000 genomes]
rs6918626	0.85[EUR][1000 genomes]
rs808593	0.83[EUR][1000 genomes]
rs808598	0.83[EUR][1000 genomes]
rs808600	0.82[EUR][1000 genomes]
rs808606	0.83[EUR][1000 genomes]
rs808607	0.83[EUR][1000 genomes]
rs808635	0.83[EUR][1000 genomes]
rs9504254	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4787400-4808800	Weak transcription	Aorta	Aorta
2	chr6:4794800-4804400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:4794800-4818800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:4795000-4806200	Weak transcription	Gastric	stomach
5	chr6:4795200-4806600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:4800000-4810400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:4801000-4805000	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:4801000-4805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:4801600-4804800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr6:4801800-4804600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:4801800-4805000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:4801800-4805200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:4801800-4805200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:4801800-4805200	Enhancers	Psoas Muscle	Psoas
15	chr6:4801800-4811600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:4802000-4805000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:4802200-4804400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:4802200-4804800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:4802200-4811200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:4802400-4804200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:4802400-4804400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:4802400-4804600	Enhancers	K562	blood
23	chr6:4802400-4805000	Enhancers	Right Atrium	heart
24	chr6:4802400-4805200	Enhancers	Lung	lung
25	chr6:4802400-4806200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:4802400-4807000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:4802400-4807400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:4802400-4810400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:4802400-4812000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:4802400-4818800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:4802600-4805000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:4802600-4805000	Enhancers	Right Ventricle	heart
33	chr6:4802800-4804600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr6:4802800-4805000	Enhancers	Brain Substantia Nigra	brain
35	chr6:4802800-4805800	Weak transcription	Fetal Brain Male	brain
36	chr6:4802800-4806200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:4803000-4804600	Enhancers	Ovary	ovary
38	chr6:4803000-4805000	Enhancers	Left Ventricle	heart
39	chr6:4803000-4805000	Enhancers	HepG2	liver
40	chr6:4803000-4805200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr6:4803000-4805200	Enhancers	Placenta	Placenta
42	chr6:4803200-4804200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr6:4803200-4804600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:4803200-4804600	Enhancers	Pancreas	Pancrea
45	chr6:4803200-4804600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:4803200-4804600	Enhancers	HSMM	muscle
47	chr6:4803200-4804800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr6:4803200-4804800	Enhancers	Spleen	Spleen
49	chr6:4803200-4805000	Enhancers	Brain Anterior Caudate	brain
50	chr6:4803200-4805000	Enhancers	Brain Hippocampus Middle	brain

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