Variant report

Variant	rs73362587
Chromosome Location	chr7:64272231-64272232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57521582	1.00[AMR][1000 genomes]
rs60117537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73350345	1.00[AMR][1000 genomes]
rs73352327	1.00[AMR][1000 genomes]
rs73352328	1.00[AMR][1000 genomes]
rs73354352	1.00[AMR][1000 genomes]
rs73354356	1.00[AMR][1000 genomes]
rs73354364	1.00[AMR][1000 genomes]
rs73354367	1.00[AMR][1000 genomes]
rs73354370	1.00[AMR][1000 genomes]
rs73354377	1.00[AMR][1000 genomes]
rs73354385	1.00[AMR][1000 genomes]
rs73354390	1.00[AMR][1000 genomes]
rs73356794	1.00[AMR][1000 genomes]
rs73359900	1.00[AMR][1000 genomes]
rs73363325	1.00[AMR][1000 genomes]
rs73363327	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv888273	chr7:63990100-64291622	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
9	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
10	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
15	nsv888281	chr7:64250409-64295884	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv970859	chr7:64267971-64276161	Strong transcription ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64255400-64277200	Weak transcription	Aorta	Aorta
2	chr7:64255800-64272600	Weak transcription	NHLF	lung
3	chr7:64255800-64278800	Weak transcription	Placenta	Placenta
4	chr7:64255800-64293200	Weak transcription	NH-A	brain
5	chr7:64255800-64293400	Weak transcription	Psoas Muscle	Psoas
6	chr7:64256000-64285200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:64256000-64294400	Weak transcription	Fetal Kidney	kidney
8	chr7:64256400-64276800	Weak transcription	HMEC	breast
9	chr7:64256800-64277200	Weak transcription	Esophagus	oesophagus
10	chr7:64256800-64277200	Weak transcription	Small Intestine	intestine
11	chr7:64256800-64278800	Weak transcription	Spleen	Spleen
12	chr7:64256800-64283800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr7:64256800-64283800	Weak transcription	Pancreas	Pancrea
14	chr7:64256800-64286200	Weak transcription	Brain Substantia Nigra	brain
15	chr7:64256800-64292200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:64257400-64283600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr7:64260200-64277000	Weak transcription	NHEK	skin
18	chr7:64260400-64272400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr7:64260600-64286200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:64260600-64288800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:64260600-64292400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:64260800-64277400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:64260800-64284000	Weak transcription	Left Ventricle	heart
24	chr7:64260800-64284400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr7:64260800-64286400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr7:64260800-64288600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:64260800-64291400	Weak transcription	Liver	Liver
28	chr7:64261000-64295400	Weak transcription	Osteobl	bone
29	chr7:64262400-64277200	Weak transcription	HSMM	muscle
30	chr7:64262800-64291400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:64263400-64284000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:64265200-64277200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:64265400-64286400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:64266000-64272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr7:64266200-64272600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:64266200-64277200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr7:64266200-64277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:64266200-64277400	Weak transcription	Thymus	Thymus
39	chr7:64267600-64277200	Weak transcription	Fetal Stomach	stomach
40	chr7:64268200-64275600	Weak transcription	K562	blood
41	chr7:64268400-64275400	Weak transcription	A549	lung
42	chr7:64268600-64279000	Weak transcription	HepG2	liver
43	chr7:64268600-64286200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:64268600-64296000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:64268800-64279400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:64268800-64292200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:64268800-64293400	Weak transcription	Brain Angular Gyrus	brain
48	chr7:64269000-64272400	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:64269000-64286200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr7:64270800-64274600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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