Variant report

Variant	rs73362882
Chromosome Location	chr6:11320205-11320206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11316228..11320319-chr6:11338551..11345302,8	MCF-7	breast:
2	chr6:11319797..11323396-chr6:11323814..11327323,3	K562	blood:
3	chr6:11317456..11320211-chr6:11352421..11354286,2	MCF-7	breast:
4	chr6:11230020..11233936-chr6:11318712..11321243,5	MCF-7	breast:
5	chr6:11204929..11207313-chr6:11318207..11320828,2	MCF-7	breast:
6	chr6:11316359..11321416-chr6:11341732..11346793,9	MCF-7	breast:
7	chr6:11315614..11317309-chr6:11319583..11322409,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16871252	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv3439555	chr6:11317566-11322064	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3360064	chr6:11318366-11321264	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3352794	chr6:11318466-11322164	Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11306400-11326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:11310800-11323000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:11311000-11323800	Weak transcription	Fetal Thymus	thymus
4	chr6:11315000-11322800	Strong transcription	Primary B cells from cord blood	blood
5	chr6:11316000-11321200	Weak transcription	Dnd41	blood
6	chr6:11316200-11329800	Weak transcription	Right Atrium	heart
7	chr6:11317400-11324600	Weak transcription	Thymus	Thymus
8	chr6:11318200-11320400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:11318400-11323800	Weak transcription	Aorta	Aorta
10	chr6:11319000-11320400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:11319000-11323400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:11319000-11324000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:11319200-11320400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:11319200-11320400	Enhancers	A549	lung
15	chr6:11319400-11320400	Genic enhancers	Lung	lung
16	chr6:11319400-11320400	Genic enhancers	GM12878-XiMat	blood
17	chr6:11319400-11324800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:11319400-11330600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:11319600-11320400	ZNF genes & repeats	Pancreas	Pancrea
20	chr6:11319600-11320800	Weak transcription	Left Ventricle	heart
21	chr6:11319600-11322600	Weak transcription	Placenta	Placenta
22	chr6:11319600-11324400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:11319600-11328000	Weak transcription	Small Intestine	intestine
24	chr6:11319600-11328200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:11319600-11330000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:11319600-11330400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:11319800-11321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:11319800-11322200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:11319800-11322200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr6:11319800-11322600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:11319800-11322600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:11319800-11322600	Weak transcription	Colonic Mucosa	Colon
33	chr6:11319800-11322600	Weak transcription	Stomach Mucosa	stomach
34	chr6:11319800-11323400	Weak transcription	Adipose Nuclei	Adipose
35	chr6:11319800-11328800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:11319800-11330600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:11319800-11330800	Weak transcription	Fetal Stomach	stomach
38	chr6:11320000-11320600	Strong transcription	Primary T cells from cord blood	blood
39	chr6:11320000-11321600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr6:11320000-11321600	Weak transcription	NH-A	brain
41	chr6:11320000-11321800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr6:11320000-11322000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:11320000-11322400	Weak transcription	HMEC	breast
44	chr6:11320000-11322600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:11320000-11323200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:11320000-11323600	Weak transcription	Fetal Intestine Small	intestine
47	chr6:11320000-11324200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:11320000-11324800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:11320000-11328400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:11320000-11329800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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