Variant report

Variant	rs73363414
Chromosome Location	chr5:166732704-166732705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HDAC2	chr5:166732704-166733217	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000254297	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59920292	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73367432	1.00[AMR][1000 genomes]
rs73367443	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869374	chr5:166488702-166817411	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv883100	chr5:166718807-166808602	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166729000-166733000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:166729600-166733200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:166729600-166733400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:166730400-166734200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:166730600-166734200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:166730800-166733200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:166730800-166735200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:166730800-166735200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:166731000-166732800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:166731000-166733000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr5:166731200-166733000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:166731200-166733600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:166731200-166735400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:166731600-166733200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:166731800-166732800	Enhancers	Fetal Heart	heart
16	chr5:166731800-166733200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:166732200-166732800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr5:166732200-166733600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:166732400-166732800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:166732400-166734800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:166732600-166732800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:166732600-166732800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr5:166732600-166733400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr5:166732600-166733400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr5:166732600-166733400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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