Variant report

Variant	rs73363466
Chromosome Location	chr7:65665291-65665292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57096373	1.00[AFR][1000 genomes]
rs73363492	1.00[AFR][1000 genomes]
rs73365406	1.00[AFR][1000 genomes]
rs73365410	1.00[AFR][1000 genomes]
rs73376372	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65660800-65669800	Weak transcription	Spleen	Spleen
2	chr7:65661600-65669400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:65663600-65669600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:65663600-65669600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:65663800-65669600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:65664200-65669600	Weak transcription	HSMMtube	muscle
7	chr7:65665000-65666000	Enhancers	Placenta	Placenta
8	chr7:65665200-65665400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:65665200-65665400	Active TSS	HepG2	liver
10	chr7:65665200-65669600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:65665200-65669600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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