Variant report

Variant	rs73363540
Chromosome Location	chr7:39066818-39066819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs73363508	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363513	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363516	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369497	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369500	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371309	1.00[AMR][1000 genomes]
rs73381669	1.00[AMR][1000 genomes]
rs73381671	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39066800-39067200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr7:39066800-39067400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr7:39066800-39067400	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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