Variant report

Variant	rs73363650
Chromosome Location	chr12:76065399-76065400
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:76055355..76059322-chr12:76064215..76068912,5	MCF-7	breast:
2	chr12:76064771..76066342-chr12:76067117..76069472,2	MCF-7	breast:
3	chr12:76059625..76062519-chr12:76062834..76067241,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17115491	0.92[AFR][1000 genomes]
rs58434374	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59665018	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61279777	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6582295	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363669	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363680	0.92[AFR][1000 genomes]
rs73363684	1.00[AMR][1000 genomes]
rs73363685	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363692	1.00[AMR][1000 genomes]
rs73363694	1.00[AMR][1000 genomes]
rs73363698	1.00[AMR][1000 genomes]
rs73363701	1.00[AMR][1000 genomes]
rs73365803	1.00[AMR][1000 genomes]
rs74109621	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74109628	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492067	chr12:75415458-76077537	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1036987	chr12:75415532-76101559	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76059800-76065800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:76061200-76066000	Weak transcription	HMEC	breast
3	chr12:76061400-76065400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:76061400-76065400	Weak transcription	Fetal Stomach	stomach
5	chr12:76061400-76065800	Weak transcription	Fetal Lung	lung
6	chr12:76061400-76066000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr12:76061400-76067400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:76061800-76066000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:76064800-76065600	Enhancers	Fetal Brain Male	brain
10	chr12:76064800-76066400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:76064800-76066400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:76065200-76066600	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links