Variant report

Variant	rs7336494
Chromosome Location	chr13:76537934-76537935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1340704	0.84[EUR][1000 genomes]
rs1340713	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1417418	0.88[EUR][1000 genomes]
rs1417420	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982607	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2211244	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4885369	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71100005	0.81[ASN][1000 genomes]
rs7319932	0.86[EUR][1000 genomes]
rs7331963	0.87[ASN][1000 genomes]
rs9530492	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9544080	0.86[EUR][1000 genomes]
rs9565209	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1042211	chr13:76533224-76561483	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv562362	chr13:76536274-76563261	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76534200-76538200	Enhancers	K562	blood
2	chr13:76536800-76538000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:76537000-76538000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:76537000-76538000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:76537000-76538000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:76537200-76538200	Enhancers	Fetal Heart	heart
7	chr13:76537400-76538000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr13:76537400-76538000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:76537400-76538000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr13:76537400-76538200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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