Variant report
Variant | rs73365115 |
---|---|
Chromosome Location | chr7:52905270-52905271 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11238232 | 0.81[ASN][1000 genomes] |
rs11974654 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11974657 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs11978145 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11979464 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs17135356 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34800110 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs59672182 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62444519 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs62444552 | 0.81[ASN][1000 genomes] |
rs6951259 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6974952 | 0.85[ASN][1000 genomes] |
rs725867 | 0.85[ASN][1000 genomes] |
rs73365118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7784341 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv888026 | chr7:52588348-53013671 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv888027 | chr7:52588348-53190508 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv888031 | chr7:52797324-52944424 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv888032 | chr7:52826003-52905932 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
5 | nsv888033 | chr7:52868222-52905932 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:52900400-52907000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |