Variant report

Variant	rs73365859
Chromosome Location	chr7:78376564-78376565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11487098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs66495951	0.98[AFR][1000 genomes]
rs6946747	0.98[AFR][1000 genomes]
rs727538	0.93[AFR][1000 genomes]
rs73365861	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365868	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969173	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78372400-78376800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78372400-78391600	Weak transcription	Pancreas	Pancrea
4	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
5	chr7:78373800-78378400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:78374200-78377400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:78374200-78379200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:78374200-78379200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:78374400-78377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:78374400-78377600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:78374800-78376800	Weak transcription	Brain Substantia Nigra	brain
12	chr7:78374800-78379800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:78375000-78376800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:78375000-78379000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:78375400-78377000	Weak transcription	Brain Anterior Caudate	brain
16	chr7:78375400-78377200	Enhancers	Fetal Brain Male	brain
17	chr7:78375400-78378400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:78375600-78377200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:78375800-78381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:78376000-78377000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:78376000-78378400	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:78376000-78378400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:78376000-78380600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:78376000-78384600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:78376200-78377000	Weak transcription	Fetal Brain Female	brain
26	chr7:78376200-78378200	Weak transcription	H1 Cell Line	embryonic stem cell

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