Variant report

Variant	rs73366561
Chromosome Location	chr15:31254423-31254424
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:31254190-31254532	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr15:31253672-31255135	HepG2	liver:	n/a	n/a
3	FOS	chr15:31254195-31254439	MCF10A-Er-Src	breast:	n/a	n/a
4	SPI1	chr15:31254409-31254885	HL-60	blood:	n/a	n/a
5	MYC	chr15:31254190-31254611	MCF10A-Er-Src	breast:	n/a	n/a
6	SPI1	chr15:31254421-31254822	GM12891	blood:	n/a	n/a
7	POLR2A	chr15:31254327-31254483	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr15:31254245-31254525	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr15:31254199-31254585	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:31252830..31256274-chr15:31263661..31267030,3	K562	blood:
2	chr15:31242525..31245070-chr15:31253686..31255271,2	K562	blood:
3	chr15:31253352..31256135-chr15:31282312..31285268,3	K562	blood:
4	chr15:31253352..31256135-chr15:31282609..31285268,3	K562	blood:

Variant related genes	Relation type
MTMR10	TF binding region
ENSG00000166912	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs55749458	1.00[AMR][1000 genomes]
rs55896057	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56179121	0.94[AFR][1000 genomes]
rs56408018	1.00[AMR][1000 genomes]
rs57499412	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58522856	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59803232	1.00[AMR][1000 genomes]
rs60002525	1.00[AMR][1000 genomes]
rs60084176	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60718659	1.00[AMR][1000 genomes]
rs61009284	1.00[AMR][1000 genomes]
rs61080715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61439612	1.00[AMR][1000 genomes]
rs61599827	1.00[AMR][1000 genomes]
rs61701824	1.00[AMR][1000 genomes]
rs7163814	1.00[AMR][1000 genomes]
rs7165699	1.00[AMR][1000 genomes]
rs7169444	1.00[AMR][1000 genomes]
rs7169542	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7170006	1.00[AMR][1000 genomes]
rs7182086	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366503	1.00[AMR][1000 genomes]
rs73366542	0.84[AFR][1000 genomes]
rs73366549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366569	1.00[AMR][1000 genomes]
rs73366580	0.94[AFR][1000 genomes]
rs73366598	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368419	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73368457	1.00[AMR][1000 genomes]
rs73377300	1.00[AMR][1000 genomes]
rs73379134	1.00[AMR][1000 genomes]
rs73379138	1.00[AMR][1000 genomes]
rs73379150	1.00[AMR][1000 genomes]
rs73379190	1.00[AMR][1000 genomes]
rs73381335	1.00[AMR][1000 genomes]
rs73381337	1.00[AMR][1000 genomes]
rs73381339	1.00[AMR][1000 genomes]
rs73381351	1.00[AMR][1000 genomes]
rs73381363	1.00[AMR][1000 genomes]
rs74012716	1.00[AMR][1000 genomes]
rs8028459	1.00[AMR][1000 genomes]
rs8029314	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033175	1.00[AMR][1000 genomes]
rs8042198	1.00[AMR][1000 genomes]
rs9783686	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427955	chr15:30467980-31273174	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv916936	chr15:30921917-31337510	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv525795	chr15:30936285-31324531	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1046874	chr15:31008133-31294654	Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
8	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
9	nsv832951	chr15:31131239-31304469	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv1039037	chr15:31140415-31277268	Strong transcription ZNF genes & repeats Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv542309	chr15:31140415-31277268	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
13	nsv521842	chr15:31140700-31272670	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv903834	chr15:31179534-31293774	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
16	nsv832952	chr15:31204426-31333998	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31200600-31254800	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr15:31225400-31255800	Strong transcription	Fetal Intestine Large	intestine
3	chr15:31225800-31256000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:31226000-31255800	Strong transcription	Fetal Stomach	stomach
5	chr15:31226000-31258800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr15:31226200-31269200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:31226400-31260800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr15:31226600-31255200	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr15:31227000-31269600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr15:31227200-31255800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:31227200-31258800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:31228400-31254600	Strong transcription	Thymus	Thymus
13	chr15:31228600-31258800	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr15:31229000-31254800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:31229200-31261000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:31230400-31258800	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:31233400-31269200	Strong transcription	Liver	Liver
18	chr15:31236600-31255000	Strong transcription	Rectal Smooth Muscle	rectum
19	chr15:31237200-31269600	Strong transcription	Primary B cells from cord blood	blood
20	chr15:31238200-31254600	Strong transcription	Fetal Lung	lung
21	chr15:31238600-31255200	Strong transcription	Fetal Kidney	kidney
22	chr15:31240400-31255000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:31241400-31254600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:31242000-31282800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr15:31242200-31254600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:31242400-31255800	Strong transcription	Fetal Intestine Small	intestine
27	chr15:31243200-31254800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:31243200-31267600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:31245000-31276400	Weak transcription	Brain Germinal Matrix	brain
30	chr15:31247000-31270200	Weak transcription	K562	blood
31	chr15:31247400-31260600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:31247600-31261000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:31247800-31258800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr15:31248200-31254600	Strong transcription	Primary T cells from cord blood	blood
35	chr15:31248200-31255200	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr15:31248400-31254600	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:31248800-31255000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:31248800-31259800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:31248800-31283000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:31249000-31269600	Strong transcription	HUVEC	blood vessel
41	chr15:31249000-31270200	Weak transcription	Stomach Mucosa	stomach
42	chr15:31249000-31276000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:31249200-31254800	Strong transcription	Osteobl	bone
44	chr15:31250000-31254800	Strong transcription	Pancreas	Pancrea
45	chr15:31250200-31254600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:31250200-31282200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr15:31250800-31255000	Strong transcription	GM12878-XiMat	blood
48	chr15:31250800-31257800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr15:31250800-31257800	Weak transcription	NHDF-Ad	bronchial
50	chr15:31250800-31261400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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