Variant report
| Variant | rs73367231 |
|---|---|
| Chromosome Location | chr14:84638970-84638971 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | BHLHE40 | chr14:84638838-84639014 | HepG2 | liver: | n/a | n/a |
| 2 | HEY1 | chr14:84638840-84639089 | HepG2 | liver: | n/a | n/a |
| 3 | BCL11A | chr14:84638802-84639015 | GM12878 | blood: | n/a | n/a |
| 4 | JUND | chr14:84638874-84638976 | HepG2 | liver: | n/a | n/a |
| 5 | RXRA | chr14:84638820-84639035 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-497E19.2.1-11 | chr14:84638664-84638970 | NONHSAT038100 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258762 | TF binding region |
| ENSG00000258923 | TF binding region |
| ENSG00000259012 | TF binding region |
rSNPs within LD-proxies of this variant (count:4)
| rs_ID | r2[population] |
|---|---|
| rs41519447 | 1.00[AMR][1000 genomes] |
| rs59321128 | 1.00[AMR][1000 genomes] |
| rs73365597 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73378984 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv565376 | chr14:84612088-84644822 | Enhancers Weak transcription | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv976360 | chr14:84637552-84639420 | Inactive region | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
