Variant report

Variant	rs73367682
Chromosome Location	chr7:78025774-78025775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10282221	1.00[EUR][1000 genomes]
rs11981895	1.00[EUR][1000 genomes]
rs28664898	1.00[EUR][1000 genomes]
rs73367668	1.00[EUR][1000 genomes]
rs73367688	1.00[EUR][1000 genomes]
rs9656146	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1033518	chr7:78013657-78038797	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78015800-78028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:78017400-78029800	Weak transcription	Aorta	Aorta
3	chr7:78019000-78026600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:78019000-78026800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:78023000-78047200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:78023200-78028000	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:78023600-78025800	Enhancers	Osteobl	bone
8	chr7:78023600-78026000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:78023600-78028600	Weak transcription	Ovary	ovary
10	chr7:78023800-78025800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr7:78023800-78026000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:78024200-78026800	Weak transcription	Brain Substantia Nigra	brain
13	chr7:78024200-78035600	Weak transcription	Brain Angular Gyrus	brain
14	chr7:78025000-78027600	Enhancers	Brain Anterior Caudate	brain
15	chr7:78025000-78028800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:78025200-78026000	Enhancers	Fetal Heart	heart
17	chr7:78025400-78027600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:78025600-78025800	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:78025600-78026800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:78025600-78027200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:78025600-78027600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:78025600-78028000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links