Variant report

Variant	rs733701
Chromosome Location	chr6:39171862-39171863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:39168499..39172318-chr6:39172546..39178479,7	K562	blood:
2	chr6:39167220..39169845-chr6:39169857..39172406,2	MCF-7	breast:
3	chr6:39169873..39175586-chr6:39175633..39178676,8	K562	blood:
4	chr6:39171748..39173462-chr6:39174879..39176528,2	MCF-7	breast:
5	chr6:39167435..39172891-chr6:39233498..39237624,6	MCF-7	breast:
6	chr6:39156673..39159411-chr6:39170742..39172943,2	K562	blood:
7	chr6:39170012..39173010-chr6:39194285..39196889,3	MCF-7	breast:
8	chr6:39168413..39175988-chr6:39191555..39198727,12	K562	blood:
9	chr6:39162911..39167327-chr6:39168116..39172779,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10456100	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2004295	0.82[JPT][hapmap]
rs2561396	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2561416	1.00[YRI][hapmap]
rs2815095	1.00[JPT][hapmap]
rs2815116	0.90[GIH][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes]
rs3778448	0.82[JPT][hapmap]
rs9394578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs733701	RPL10A	cis	cerebellum	SCAN

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39150600-39193800	Genic enhancers	Fetal Intestine Small	intestine
2	chr6:39155400-39172400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:39156400-39177200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:39156800-39193400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:39163800-39174000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:39163800-39192800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:39164600-39173400	Enhancers	Stomach Mucosa	stomach
8	chr6:39165400-39172600	Weak transcription	Fetal Stomach	stomach
9	chr6:39166000-39174200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:39166200-39173800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:39166400-39178200	Enhancers	Placenta	Placenta
12	chr6:39167400-39178600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:39167800-39173800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:39168600-39173000	Weak transcription	Fetal Kidney	kidney
15	chr6:39169000-39172400	Weak transcription	Spleen	Spleen
16	chr6:39169400-39193600	Enhancers	Liver	Liver
17	chr6:39170000-39172000	Enhancers	Ovary	ovary
18	chr6:39170000-39172600	Enhancers	Gastric	stomach
19	chr6:39170000-39174600	Enhancers	Colonic Mucosa	Colon
20	chr6:39170000-39179400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:39170200-39174000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:39170400-39176000	Weak transcription	Small Intestine	intestine
23	chr6:39170400-39179200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:39170600-39173800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:39170600-39174200	Enhancers	Pancreas	Pancrea
26	chr6:39170800-39172200	Enhancers	Fetal Intestine Large	intestine
27	chr6:39170800-39173400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:39170800-39175200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:39170800-39179200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr6:39171000-39172200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:39171000-39172400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:39171000-39172600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr6:39171000-39172800	Flanking Active TSS	Hela-S3	cervix
34	chr6:39171000-39173400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:39171000-39174000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:39171000-39174200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr6:39171000-39176000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr6:39171000-39179200	Genic enhancers	K562	blood
39	chr6:39171200-39172000	Enhancers	HMEC	breast
40	chr6:39171200-39172000	Enhancers	HSMMtube	muscle
41	chr6:39171200-39172600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:39171200-39173400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:39171200-39173400	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr6:39171200-39173400	Enhancers	Duodenum Mucosa	Duodenum
45	chr6:39171200-39174000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr6:39171200-39174000	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr6:39171200-39174400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr6:39171200-39174600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:39171400-39172200	Enhancers	NHEK	skin
50	chr6:39171400-39172400	Weak transcription	Lung	lung

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