Variant report

Variant	rs73370798
Chromosome Location	chr21:17691796-17691797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28753862	1.00[AMR][1000 genomes]
rs9974435	1.00[AMR][1000 genomes]
rs9981528	1.00[AMR][1000 genomes]
rs9982562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834051	chr21:17564843-17721764	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
4	esv2830061	chr21:17667720-17693951	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17682800-17693400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr21:17682800-17693800	Weak transcription	Liver	Liver
3	chr21:17689400-17700800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr21:17691000-17701000	Weak transcription	Brain Anterior Caudate	brain
5	chr21:17691200-17691800	Enhancers	Brain Substantia Nigra	brain
6	chr21:17691400-17691800	Enhancers	Esophagus	oesophagus
7	chr21:17691400-17691800	Enhancers	Gastric	stomach
8	chr21:17691400-17691800	Enhancers	Right Atrium	heart
9	chr21:17691400-17692000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr21:17691400-17692000	Enhancers	Ovary	ovary
11	chr21:17691600-17691800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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