Variant report

Variant	rs73370930
Chromosome Location	chr7:39497691-39497692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17171581	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39473000-39498000	Weak transcription	Pancreas	Pancrea
2	chr7:39485800-39502000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:39488400-39499400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:39492000-39504800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:39493800-39500800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:39494000-39499400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:39494000-39500800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:39496400-39497800	Enhancers	Fetal Stomach	stomach
9	chr7:39497200-39503600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:39497600-39497800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:39497600-39498000	Enhancers	Fetal Muscle Leg	muscle
12	chr7:39497600-39498400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:39497600-39498400	Active TSS	Adipose Nuclei	Adipose
14	chr7:39497600-39498600	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr7:39497600-39499400	Active TSS	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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