Variant report
| Variant | rs73370981 |
|---|---|
| Chromosome Location | chr10:91587167-91587168 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:91585659..91588157-chr10:92199771..92201481,2 | MCF-7 | breast: |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-KIF20B-2 | chr10:91586955-91590598 | NONHSAT015541 |
| 2 | lnc-KIF20B-2 | chr10:91586955-91590598 | NONHSAT015542 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs28694455 | 0.89[AMR][1000 genomes] |
| rs34785987 | 1.00[EUR][1000 genomes] |
| rs41434151 | 0.97[AFR][1000 genomes] |
| rs58399639 | 1.00[EUR][1000 genomes] |
| rs60735369 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60877521 | 1.00[EUR][1000 genomes] |
| rs61236656 | 1.00[EUR][1000 genomes] |
| rs7095217 | 0.80[AFR][1000 genomes] |
| rs73370915 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73370983 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73372735 | 0.89[AMR][1000 genomes] |
| rs73380931 | 1.00[EUR][1000 genomes] |
| rs73382916 | 1.00[EUR][1000 genomes] |
| rs73384964 | 1.00[EUR][1000 genomes] |
| rs73386407 | 1.00[EUR][1000 genomes] |
| rs73386422 | 1.00[EUR][1000 genomes] |
| rs73386494 | 1.00[EUR][1000 genomes] |
| rs73386498 | 1.00[EUR][1000 genomes] |
| rs7902947 | 0.92[AFR][1000 genomes] |
| rs7908017 | 1.00[EUR][1000 genomes] |
| rs7912966 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046241 | chr10:91478562-91614437 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv869080 | chr10:91498641-91712834 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv1036581 | chr10:91526705-91691536 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv1043571 | chr10:91568555-92036154 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 5 | nsv551874 | chr10:91570211-92036154 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
