Variant report

Variant	rs73371306
Chromosome Location	chr10:91214998-91214999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11185728	0.80[ASN][1000 genomes]
rs11185729	0.80[ASN][1000 genomes]
rs11185730	0.80[ASN][1000 genomes]
rs11203134	0.85[ASN][1000 genomes]
rs11203143	0.95[ASN][1000 genomes]
rs11203146	0.85[ASN][1000 genomes]
rs11203147	0.80[ASN][1000 genomes]
rs12359459	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59833406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61088240	0.82[ASN][1000 genomes]
rs7090764	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:91198800-91223600	Weak transcription	Left Ventricle	heart
3	chr10:91212000-91216600	Weak transcription	HUVEC	blood vessel
4	chr10:91213000-91217800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:91214000-91223600	Weak transcription	Pancreas	Pancrea
6	chr10:91214200-91223400	Weak transcription	Placenta	Placenta
7	chr10:91214400-91215000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr10:91214600-91215800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:91214600-91216000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:91214800-91216000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91214800-91216000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:91214800-91216200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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