Variant report

Variant	rs73371678
Chromosome Location	chr6:15149320-15149321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15147856..15151805-chr6:15244004..15248641,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11964947	1.00[AMR][1000 genomes]
rs57437484	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58754296	1.00[AMR][1000 genomes]
rs59019038	0.91[AFR][1000 genomes]
rs73371648	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373406	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373456	1.00[AMR][1000 genomes]
rs73373464	1.00[AMR][1000 genomes]
rs73373470	1.00[AMR][1000 genomes]
rs73373480	1.00[AMR][1000 genomes]
rs73373493	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:15146600-15150600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:15148000-15149600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:15148200-15149400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:15148200-15149400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:15148200-15149400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:15148200-15149400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:15148200-15149400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:15148200-15149400	Enhancers	Esophagus	oesophagus
12	chr6:15148200-15149400	Enhancers	Fetal Brain Male	brain
13	chr6:15148200-15149400	Enhancers	Psoas Muscle	Psoas
14	chr6:15148200-15149400	Enhancers	NHEK	skin
15	chr6:15148200-15149400	Enhancers	Osteobl	bone
16	chr6:15148200-15149600	Enhancers	HMEC	breast
17	chr6:15148400-15149400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:15148400-15149400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr6:15148400-15150600	Weak transcription	Right Atrium	heart
20	chr6:15148600-15149400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:15148600-15149400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:15148600-15149400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:15148600-15149400	Enhancers	Fetal Muscle Leg	muscle
24	chr6:15148600-15149400	Enhancers	Fetal Stomach	stomach
25	chr6:15148600-15149400	Bivalent Enhancer	HepG2	liver
26	chr6:15148600-15149400	Enhancers	NH-A	brain
27	chr6:15148600-15153000	Weak transcription	K562	blood
28	chr6:15148800-15149400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:15148800-15149400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr6:15148800-15149400	Enhancers	Fetal Brain Female	brain
31	chr6:15149000-15149400	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:15149200-15150400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr6:15149200-15150400	Weak transcription	GM12878-XiMat	blood
34	chr6:15149200-15153000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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