Variant report

Variant	rs73372718
Chromosome Location	chr5:167333798-167333799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73372716	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167326800-167342400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167328000-167339200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167328000-167339400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167328000-167342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167328000-167343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167330800-167338600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167331400-167339200	Weak transcription	NHEK	skin
8	chr5:167332000-167333800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:167332400-167333800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:167332400-167333800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:167332800-167333800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:167333000-167333800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:167333200-167333800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr5:167333400-167333800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:167333400-167333800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:167333400-167333800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:167333400-167333800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr5:167333400-167333800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:167333400-167334000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr5:167333600-167345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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