Variant report

Variant	rs73373687
Chromosome Location	chr6:15675051-15675052
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15672759..15682190-chr6:16128127..16132961,11	K562	blood:
2	chr6:15674092..15676465-chr6:16128146..16130347,2	MCF-7	breast:
3	chr6:15672874..15675125-chr6:15675945..15678266,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTNBP1-1	chr6:15674470-15675115	XLOC_005620

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6920240	0.83[AMR][1000 genomes]
rs73373682	0.83[AMR][1000 genomes]
rs73373688	0.86[AFR][1000 genomes]
rs73373692	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15672400-15675200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15672800-15677200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:15673200-15677400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:15673800-15676400	Enhancers	Fetal Muscle Leg	muscle
5	chr6:15674000-15677000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15674400-15675200	Enhancers	Fetal Muscle Trunk	muscle
7	chr6:15674400-15676600	Enhancers	Psoas Muscle	Psoas
8	chr6:15674600-15676400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:15674600-15676600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:15674800-15675200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr6:15674800-15675600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr6:15674800-15675800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:15674800-15676200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:15674800-15676600	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:15674800-15676600	Enhancers	Brain Anterior Caudate	brain
16	chr6:15674800-15676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:15675000-15675200	Bivalent Enhancer	Small Intestine	intestine
18	chr6:15675000-15675400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr6:15675000-15675800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:15675000-15675800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:15675000-15675800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:15675000-15675800	Enhancers	K562	blood
23	chr6:15675000-15676000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:15675000-15676000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:15675000-15676200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:15675000-15676200	Enhancers	Brain Substantia Nigra	brain
27	chr6:15675000-15676400	Bivalent Enhancer	HepG2	liver
28	chr6:15675000-15676400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr6:15675000-15676600	Enhancers	Fetal Intestine Small	intestine
30	chr6:15675000-15676600	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links