Variant report

Variant	rs73374909
Chromosome Location	chr12:86107550-86107551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11116993	0.83[AMR][1000 genomes]
rs11833551	1.00[AMR][1000 genomes]
rs12316200	0.83[AMR][1000 genomes]
rs12316964	0.83[AMR][1000 genomes]
rs12319540	0.83[AMR][1000 genomes]
rs12320271	1.00[AMR][1000 genomes]
rs17013030	1.00[AMR][1000 genomes]
rs17013093	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013165	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013264	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17013270	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4316582	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59165763	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61390175	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7294826	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7298392	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301672	1.00[AMR][1000 genomes]
rs7309356	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7316003	0.83[AMR][1000 genomes]
rs73371080	1.00[AMR][1000 genomes]
rs73371084	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373095	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373096	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73375744	0.81[AFR][1000 genomes]
rs73375757	0.84[AFR][1000 genomes]
rs7953396	0.83[AMR][1000 genomes]
rs7966095	0.83[AMR][1000 genomes]
rs7972166	0.83[AMR][1000 genomes]
rs7973406	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1043253	chr12:85888151-86125364	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1052187	chr12:85954455-86278200	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv541560	chr12:85954455-86278200	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1054475	chr12:85985510-86175711	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv541561	chr12:85985510-86175711	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86105400-86108200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:86106600-86107600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr12:86107200-86107600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:86107400-86107600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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