Variant report

Variant	rs73374996
Chromosome Location	chr12:76192364-76192365
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59309254	1.00[AMR][1000 genomes]
rs73371358	1.00[AMR][1000 genomes]
rs73371360	1.00[AMR][1000 genomes]
rs73371365	1.00[AMR][1000 genomes]
rs73375002	1.00[AMR][1000 genomes]
rs73376967	1.00[AMR][1000 genomes]
rs73376969	1.00[AMR][1000 genomes]
rs73376976	1.00[AMR][1000 genomes]
rs73376991	1.00[AMR][1000 genomes]
rs73378903	1.00[AMR][1000 genomes]
rs73378910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040583	chr12:75742802-76360276	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv948653	chr12:75773464-76220618	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv832463	chr12:76136551-76316703	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899315	chr12:76163309-76385096	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:76184600-76200800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:76187000-76201600	Weak transcription	NHEK	skin
3	chr12:76187000-76202000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:76191400-76192800	Enhancers	HepG2	liver
5	chr12:76191600-76192800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:76191800-76192400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:76191800-76192400	Enhancers	Fetal Lung	lung
8	chr12:76191800-76192400	Enhancers	HMEC	breast
9	chr12:76191800-76192600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:76191800-76192600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr12:76191800-76192600	Enhancers	A549	lung
12	chr12:76192000-76192400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:76192200-76197400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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