Variant report

Variant	rs73375914
Chromosome Location	chr15:31397586-31397587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:31396994-31397844	SK-N-SH	brain:	n/a	n/a
2	EP300	chr15:31396996-31397770	SK-N-SH	brain:	n/a	n/a
3	MEF2A	chr15:31397028-31397688	SK-N-SH	brain:	n/a	n/a
4	EP300	chr15:31397045-31397648	SK-N-SH	brain:	n/a	n/a
5	NFIC	chr15:31396996-31397738	SK-N-SH	brain:	n/a	n/a
6	PBX3	chr15:31397011-31397704	SK-N-SH	brain:	n/a	n/a
7	FOSL2	chr15:31397000-31397700	SK-N-SH	brain:	n/a	n/a
8	TEAD4	chr15:31396986-31397766	SK-N-SH	brain:	n/a	n/a
9	PBX3	chr15:31397044-31397663	SK-N-SH	brain:	n/a	n/a
10	TCF12	chr15:31396957-31397831	SK-N-SH	brain:	n/a	n/a
11	NFIC	chr15:31396982-31397593	ECC-1	luminal epithelium:	n/a	n/a
12	MAX	chr15:31397079-31397692	SK-N-SH	brain:	n/a	n/a
13	GATA3	chr15:31396998-31397743	SK-N-SH	brain:	n/a	n/a
14	POLR2A	chr15:31397014-31397624	SK-N-SH	brain:	n/a	n/a
15	NFIC	chr15:31397028-31397705	SK-N-SH	brain:	n/a	n/a
16	TCF12	chr15:31396979-31397838	SK-N-SH	brain:	n/a	n/a
17	JUND	chr15:31397003-31397669	SK-N-SH	brain:	n/a	n/a
18	TEAD4	chr15:31396966-31397856	SK-N-SH	brain:	n/a	n/a
19	JUND	chr15:31396995-31397681	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
TRPM1	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11853133	1.00[EUR][1000 genomes]
rs11857270	1.00[EUR][1000 genomes]
rs16956494	1.00[EUR][1000 genomes]
rs7169580	1.00[EUR][1000 genomes]
rs7179746	1.00[EUR][1000 genomes]
rs7181532	1.00[EUR][1000 genomes]
rs73374074	1.00[AMR][1000 genomes]
rs8042443	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	esv33507	chr15:31183324-31471023	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
9	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
10	nsv903836	chr15:31330280-31512652	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
11	nsv431372	chr15:31341461-31409090	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1040840	chr15:31348902-31412706	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
13	nsv542316	chr15:31348902-31412706	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
14	nsv903837	chr15:31362654-31418766	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1046253	chr15:31364402-31412706	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1044255	chr15:31391226-31424185	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31392600-31398000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:31394400-31397600	Weak transcription	Brain Germinal Matrix	brain
3	chr15:31395200-31403600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:31396600-31401200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:31397000-31398000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:31397000-31398000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:31397000-31398200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:31397000-31398200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:31397200-31397600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:31397200-31397600	Enhancers	HMEC	breast
11	chr15:31397200-31397600	Enhancers	NHEK	skin
12	chr15:31397200-31398000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:31397200-31398000	Active TSS	Brain Substantia Nigra	brain
14	chr15:31397200-31398000	Enhancers	HUVEC	blood vessel
15	chr15:31397200-31398000	Flanking Active TSS	NH-A	brain
16	chr15:31397200-31398200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:31397200-31398200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:31397200-31398200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:31397200-31398200	Enhancers	Fetal Brain Male	brain
20	chr15:31397200-31398200	Enhancers	A549	lung
21	chr15:31397200-31399400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:31397400-31397600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:31397400-31397600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:31397400-31397600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:31397400-31397600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:31397400-31397600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr15:31397400-31397600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr15:31397400-31397600	Flanking Active TSS	NHLF	lung
29	chr15:31397400-31397600	Flanking Active TSS	Osteobl	bone
30	chr15:31397400-31397800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:31397400-31397800	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr15:31397400-31397800	Enhancers	Stomach Mucosa	stomach
33	chr15:31397400-31397800	Active TSS	HSMM	muscle
34	chr15:31397400-31397800	Enhancers	HSMMtube	muscle
35	chr15:31397400-31398000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr15:31397400-31398000	Active TSS	Brain Angular Gyrus	brain
37	chr15:31397400-31398000	Active TSS	Brain Cingulate Gyrus	brain
38	chr15:31397400-31398200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:31397400-31398200	Active TSS	Brain Anterior Caudate	brain
40	chr15:31397400-31398200	Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links