Variant report

Variant	rs73377883
Chromosome Location	chr9:2845340-2845341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:2843862-2845583	GM12878	blood:	n/a	chr9:2844303-2844312
2	TAL1	chr9:2845280-2845526	K562	blood:	n/a	n/a
3	POLR2A	chr9:2842714-2845359	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:2844688-2845405	GM12878	blood:	n/a	n/a
5	POLR2A	chr9:2843782-2845374	MCF10A-Er-Src	breast:	n/a	n/a
6	HCFC1	chr9:2843761-2845495	Hela-S3	cervix:	n/a	n/a
7	MXI1	chr9:2842135-2845377	SK-N-SH	brain:	n/a	n/a
8	JUND	chr9:2843788-2845561	SK-N-SH	brain:	n/a	chr9:2844303-2844312

No.	Distal block	Cell Line	Cell type
1	chr9:2845302..2847142-chr9:2852039..2853784,2	K562	blood:
2	chr9:2841153..2844089-chr9:2845001..2847506,3	MCF-7	breast:
3	chr9:2841657..2846061-chr9:3525153..3529600,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNV2-5	chr9:2844364-2845906	NONHSAT130013

Variant related genes	Relation type
KIAA0020	TF binding region
ENSG00000080298	Chromatin interaction
ENSG00000232104	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73377889	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892079	chr9:2681430-2931341	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv892081	chr9:2691186-2851026	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1024262	chr9:2703159-3067931	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028011	chr9:2759097-2904277	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv1022873	chr9:2768825-2863264	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv892083	chr9:2809548-2900651	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2842600-2845400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:2842800-2845400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:2842800-2845400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr9:2842800-2845400	Active TSS	K562	blood
5	chr9:2842800-2845600	Active TSS	Colonic Mucosa	Colon
6	chr9:2843000-2845400	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr9:2843000-2845400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:2843000-2845400	Active TSS	Fetal Muscle Trunk	muscle
9	chr9:2843000-2845600	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr9:2843000-2845600	Active TSS	Right Atrium	heart
11	chr9:2843200-2845400	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr9:2843400-2845400	Active TSS	Fetal Brain Male	brain
13	chr9:2843600-2845400	Active TSS	Left Ventricle	heart
14	chr9:2844200-2845400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr9:2844400-2845400	Flanking Active TSS	Primary T cells from cord blood	blood
16	chr9:2844400-2845400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:2844400-2845800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:2844600-2845400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr9:2844600-2845400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr9:2844600-2845400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:2844600-2845400	Flanking Active TSS	Brain Germinal Matrix	brain
22	chr9:2844600-2845400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr9:2844600-2845400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr9:2844600-2845400	Flanking Active TSS	Thymus	Thymus
25	chr9:2844600-2845400	Flanking Active TSS	HUVEC	blood vessel
26	chr9:2844600-2845600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr9:2844600-2845600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr9:2844600-2845600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
29	chr9:2844600-2845600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr9:2844600-2845600	Flanking Active TSS	Brain Angular Gyrus	brain
31	chr9:2844600-2845600	Flanking Active TSS	Brain Substantia Nigra	brain
32	chr9:2844600-2845600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr9:2844600-2845800	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr9:2844800-2845400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:2844800-2845400	Flanking Active TSS	Liver	Liver
36	chr9:2844800-2845400	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr9:2844800-2845400	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr9:2844800-2845400	Flanking Active TSS	Fetal Brain Female	brain
39	chr9:2844800-2845400	Flanking Active TSS	Fetal Heart	heart
40	chr9:2844800-2845400	Flanking Active TSS	Fetal Muscle Leg	muscle
41	chr9:2844800-2845400	Flanking Active TSS	Fetal Stomach	stomach
42	chr9:2844800-2845400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr9:2844800-2845400	Flanking Active TSS	NH-A	brain
44	chr9:2844800-2845600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr9:2844800-2845600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr9:2844800-2845600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:2844800-2845600	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr9:2844800-2845600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr9:2844800-2845600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:2844800-2845600	Flanking Active TSS	Colon Smooth Muscle	Colon

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