Variant report

Variant	rs73378555
Chromosome Location	chr15:33384588-33384589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56999001	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57101742	1.00[AMR][1000 genomes]
rs59310964	1.00[AMR][1000 genomes]
rs59972399	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60059020	1.00[AMR][1000 genomes]
rs60916301	1.00[AMR][1000 genomes]
rs73372959	1.00[AMR][1000 genomes]
rs73372977	1.00[AMR][1000 genomes]
rs73374818	1.00[AMR][1000 genomes]
rs73374820	1.00[AMR][1000 genomes]
rs73374840	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374886	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378548	1.00[AMR][1000 genomes]
rs73378566	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031743	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33376800-33384600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:33376800-33384600	Weak transcription	NH-A	brain
3	chr15:33379400-33386200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:33380600-33387200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:33381000-33384800	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr15:33381400-33386800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:33381400-33387200	Enhancers	Osteobl	bone
8	chr15:33381800-33387200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:33382600-33385600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:33382800-33385000	Enhancers	Fetal Kidney	kidney
11	chr15:33383000-33384600	Weak transcription	Esophagus	oesophagus
12	chr15:33383000-33384600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:33383000-33389800	Weak transcription	Hela-S3	cervix
14	chr15:33383000-33390000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:33383200-33385400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr15:33383200-33388400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:33383200-33390400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:33383400-33384800	Enhancers	Thymus	Thymus
19	chr15:33384000-33384600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:33384000-33384800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:33384200-33384600	Enhancers	Brain Angular Gyrus	brain
22	chr15:33384200-33384800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr15:33384200-33384800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr15:33384200-33384800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:33384200-33384800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr15:33384200-33384800	Enhancers	Gastric	stomach
27	chr15:33384200-33384800	Enhancers	Ovary	ovary
28	chr15:33384200-33384800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:33384200-33384800	Enhancers	Stomach Mucosa	stomach
30	chr15:33384200-33384800	Flanking Active TSS	NHLF	lung
31	chr15:33384200-33385000	Enhancers	Primary T cells from cord blood	blood
32	chr15:33384200-33385000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:33384200-33385000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr15:33384200-33385000	Enhancers	Muscle Satellite Cultured Cells	--
35	chr15:33384200-33385000	Enhancers	Colonic Mucosa	Colon
36	chr15:33384200-33385000	Enhancers	Fetal Thymus	thymus
37	chr15:33384200-33385000	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr15:33384200-33385000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr15:33384200-33385200	Enhancers	Fetal Lung	lung
40	chr15:33384200-33385200	Enhancers	Fetal Muscle Leg	muscle
41	chr15:33384200-33385400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:33384200-33385600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:33384200-33387000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:33384200-33387200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr15:33384200-33387200	Enhancers	HSMMtube	muscle
46	chr15:33384200-33387200	Enhancers	NHDF-Ad	bronchial
47	chr15:33384400-33384600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr15:33384400-33384600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr15:33384400-33384600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
50	chr15:33384400-33384600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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