Variant report

Variant	rs73378642
Chromosome Location	chr7:79783463-79783464
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59599037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73378647	0.84[EUR][1000 genomes]
rs73378654	0.84[EUR][1000 genomes]
rs73378656	0.84[EUR][1000 genomes]
rs73378659	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79775600-79787800	Weak transcription	Esophagus	oesophagus
2	chr7:79775600-79787800	Enhancers	Fetal Lung	lung
3	chr7:79776200-79796200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:79776600-79786000	Weak transcription	Fetal Brain Female	brain
5	chr7:79777400-79785200	Enhancers	NHDF-Ad	bronchial
6	chr7:79777600-79791000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:79778600-79783600	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:79779200-79784600	Enhancers	NHLF	lung
9	chr7:79780400-79791400	Weak transcription	Psoas Muscle	Psoas
10	chr7:79780600-79783600	Weak transcription	Liver	Liver
11	chr7:79780600-79788200	Weak transcription	Ovary	ovary
12	chr7:79781000-79786600	Enhancers	Hela-S3	cervix
13	chr7:79781000-79788200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:79781200-79787800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:79781200-79803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:79781400-79786200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:79781600-79784200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:79781600-79785600	Enhancers	NHEK	skin
19	chr7:79781600-79789000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:79781600-79794200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:79781600-79795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:79781600-79797000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:79782000-79784000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:79782200-79783600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr7:79782200-79783800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:79782200-79785000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:79782400-79783800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:79782400-79784000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:79782400-79784000	Enhancers	Fetal Kidney	kidney
30	chr7:79782400-79786600	Enhancers	Brain Cingulate Gyrus	brain
31	chr7:79782600-79783600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr7:79782600-79783600	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr7:79782600-79784000	Enhancers	Brain Substantia Nigra	brain
34	chr7:79782600-79784400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:79782600-79784400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:79782600-79784800	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr7:79782600-79785200	Enhancers	A549	lung
38	chr7:79782800-79783800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:79782800-79784000	Enhancers	Brain Angular Gyrus	brain
40	chr7:79782800-79784200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:79782800-79784200	Enhancers	HMEC	breast
42	chr7:79782800-79784200	Enhancers	Osteobl	bone
43	chr7:79782800-79785000	Enhancers	Muscle Satellite Cultured Cells	--
44	chr7:79782800-79785000	Enhancers	Rectal Smooth Muscle	rectum
45	chr7:79782800-79786200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr7:79782800-79786400	Enhancers	Adipose Nuclei	Adipose
47	chr7:79782800-79787000	Enhancers	Brain Hippocampus Middle	brain
48	chr7:79783000-79784000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:79783200-79783600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:79783200-79783600	Weak transcription	Colon Smooth Muscle	Colon

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