Variant report

Variant	rs73379712
Chromosome Location	chr12:85411516-85411517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1827996	0.86[AFR][1000 genomes]
rs1911524	0.80[AFR][1000 genomes]
rs1995685	0.86[AFR][1000 genomes]
rs2063127	0.86[AFR][1000 genomes]
rs2660448	0.86[AFR][1000 genomes]
rs2660450	0.80[AFR][1000 genomes]
rs2660452	0.80[AFR][1000 genomes]
rs2660457	0.80[AFR][1000 genomes]
rs359985	0.83[AFR][1000 genomes]
rs57806417	0.86[AFR][1000 genomes]
rs57806767	0.91[AFR][1000 genomes]
rs59218153	0.97[AFR][1000 genomes]
rs73379716	0.97[AFR][1000 genomes]
rs73379739	0.91[AFR][1000 genomes]
rs73379743	0.91[AFR][1000 genomes]
rs73379753	0.86[AFR][1000 genomes]
rs812353	0.86[AFR][1000 genomes]
rs959037	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899377	chr12:85157346-85629241	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1040452	chr12:85179586-85747907	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85408600-85418000	Enhancers	Hela-S3	cervix
2	chr12:85409000-85412200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:85409800-85412000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr12:85410200-85412000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:85410600-85411600	Enhancers	HSMM	muscle
6	chr12:85411400-85414400	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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