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Variant report
Variant
rs7338122
Chromosome Location
chr13:93136776-93136777
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:8)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:8 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
FOS
chr13:93136736-93136814
MCF10A-Er-Src
breast:
n/a
n/a
2
MAFF
chr13:93136717-93137022
K562
blood:
n/a
chr13:93136862-93136880
3
MAFF
chr13:93136724-93136997
HepG2
liver:
n/a
chr13:93136862-93136880
4
MAFK
chr13:93136752-93136985
IMR90
lung:
n/a
n/a
5
MAFK
chr13:93136739-93136975
HepG2
liver:
n/a
n/a
6
FOS
chr13:93136737-93136821
MCF10A-Er-Src
breast:
n/a
n/a
7
MAFK
chr13:93136629-93137022
K562
blood:
n/a
n/a
8
MAFK
chr13:93136699-93137024
HepG2
liver:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
GPC5-IT1
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs7328646
0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7336965
0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv832680
chr13:93021114-93181489
Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers
TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links