Variant report

Variant	rs73382319
Chromosome Location	chr6:24934392-24934393
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24933782..24934728-chr6:25070736..25071642,2	K562	blood:
2	chr6:24933973..24934661-chr6:24991849..24992763,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17839854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45617645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933228	0.90[EUR][1000 genomes]
rs73382339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73382350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73382361	0.82[EUR][1000 genomes]
rs73382372	1.00[EUR][1000 genomes]
rs73398461	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73398472	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73398481	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24926800-24934400	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
2	chr6:24927800-24934400	Enhancers	HSMMtube	muscle
3	chr6:24929000-24935200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
4	chr6:24929600-24936000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:24930200-24934400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:24930200-24935600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:24930400-24934600	Enhancers	Hela-S3	cervix
8	chr6:24930600-24935600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:24930800-24934400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:24930800-24938200	Weak transcription	Right Atrium	heart
11	chr6:24931000-24936000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:24931000-24936800	Weak transcription	Gastric	stomach
13	chr6:24931000-24937800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:24931200-24937200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:24931800-24936400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:24932200-24935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:24932200-24935800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:24932200-24935800	Weak transcription	Adipose Nuclei	Adipose
19	chr6:24932400-24936400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr6:24932400-24936600	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr6:24932400-24937200	Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr6:24932600-24935600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:24932600-24937200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:24932800-24935800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:24932800-24936800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:24933000-24934600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr6:24933000-24934600	Flanking Active TSS	Fetal Thymus	thymus
28	chr6:24933000-24936000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:24933200-24934400	Active TSS	Rectal Smooth Muscle	rectum
30	chr6:24933200-24934600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:24933400-24934400	Flanking Active TSS	GM12878-XiMat	blood
32	chr6:24933400-24934800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr6:24933400-24934800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:24933400-24935800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:24933400-24936600	Active TSS	Primary T cells from cord blood	blood
36	chr6:24933600-24934400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:24933600-24936000	Active TSS	Small Intestine	intestine
38	chr6:24933600-24936200	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr6:24933600-24936800	Active TSS	Primary T cells fromperipheralblood	blood
40	chr6:24933600-24937400	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr6:24933800-24934600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:24933800-24934600	Enhancers	Fetal Heart	heart
43	chr6:24933800-24935000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr6:24933800-24935600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:24933800-24935800	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:24933800-24936200	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr6:24933800-24936200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:24933800-24936400	Active TSS	H9 Cell Line	embryonic stem cell
49	chr6:24933800-24936400	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr6:24934000-24934400	Active TSS	ES-I3 Cell Line	embryonic stem cell

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