Variant report

Variant	rs73383039
Chromosome Location	chr15:31673864-31673865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31668360..31671793-chr15:31672746..31676578,5	K562	blood:
2	chr15:31668360..31671793-chr15:31673834..31676578,3	K562	blood:
3	chr15:31673644..31676164-chr15:31678034..31680929,2	K562	blood:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61271741	1.00[AMR][1000 genomes]
rs73368628	1.00[AMR][1000 genomes]
rs73368694	1.00[AMR][1000 genomes]
rs73383033	1.00[AMR][1000 genomes]
rs73383081	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv516681	chr15:31616674-31675453	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
13	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
14	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31663000-31674400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:31663200-31675800	Strong transcription	Dnd41	blood
3	chr15:31663800-31674600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:31664000-31674600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:31664800-31679800	Weak transcription	Hela-S3	cervix
6	chr15:31665000-31675600	Strong transcription	Brain Germinal Matrix	brain
7	chr15:31665400-31680000	Weak transcription	Ovary	ovary
8	chr15:31665800-31680000	Weak transcription	Fetal Lung	lung
9	chr15:31666000-31675000	Strong transcription	Thymus	Thymus
10	chr15:31666000-31675600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr15:31666000-31679400	Weak transcription	Stomach Mucosa	stomach
12	chr15:31666600-31674400	Weak transcription	HepG2	liver
13	chr15:31666600-31674800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:31666800-31675200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:31667400-31674400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:31667600-31674400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:31668000-31674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:31668000-31675200	Strong transcription	Stomach Smooth Muscle	stomach
19	chr15:31668200-31674200	Strong transcription	Adipose Nuclei	Adipose
20	chr15:31668200-31675000	Strong transcription	Gastric	stomach
21	chr15:31668400-31677200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:31669000-31679800	Weak transcription	GM12878-XiMat	blood
23	chr15:31669400-31675000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:31669400-31675800	Strong transcription	Spleen	Spleen
25	chr15:31669800-31674800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:31669800-31675000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:31669800-31675000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:31669800-31675000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:31670200-31674400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:31670800-31675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:31670800-31676400	Weak transcription	HMEC	breast
32	chr15:31670800-31683800	Weak transcription	Small Intestine	intestine
33	chr15:31671000-31674000	Strong transcription	Fetal Thymus	thymus
34	chr15:31671000-31674200	Strong transcription	Colonic Mucosa	Colon
35	chr15:31671000-31674200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:31671000-31674600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:31671000-31674800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:31671000-31675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:31671000-31675400	Strong transcription	Primary T cells from cord blood	blood
40	chr15:31671200-31674200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr15:31671200-31674200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr15:31671200-31674600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:31671200-31674600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:31671400-31674400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:31671400-31674400	Weak transcription	Psoas Muscle	Psoas
46	chr15:31671400-31675200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr15:31671400-31675600	Weak transcription	Placenta	Placenta
48	chr15:31671600-31674200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:31671800-31674600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:31671800-31677000	Weak transcription	HSMM	muscle

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