Variant report

Variant	rs73383298
Chromosome Location	chr12:105828347-105828348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11112550	1.00[EUR][1000 genomes]
rs11829834	1.00[AMR][1000 genomes]
rs12099891	1.00[AMR][1000 genomes]
rs12317775	1.00[EUR][1000 genomes]
rs28452693	1.00[EUR][1000 genomes]
rs56852671	1.00[AMR][1000 genomes]
rs60274159	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60471022	1.00[AMR][1000 genomes]
rs61048416	1.00[EUR][1000 genomes]
rs7298586	1.00[EUR][1000 genomes]
rs7302359	1.00[AMR][1000 genomes]
rs7315499	1.00[EUR][1000 genomes]
rs73383296	1.00[EUR][1000 genomes]
rs73383302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385004	1.00[EUR][1000 genomes]
rs73385007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385077	1.00[AMR][1000 genomes]
rs7956928	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105813000-105832400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:105820600-105832600	Weak transcription	Gastric	stomach
3	chr12:105826000-105829600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:105826800-105828800	Enhancers	HUVEC	blood vessel
5	chr12:105827000-105828600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:105827000-105828800	Enhancers	NHEK	skin
7	chr12:105827200-105828400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr12:105827200-105828600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:105827200-105828600	Enhancers	HMEC	breast
10	chr12:105827200-105828600	Enhancers	NH-A	brain
11	chr12:105827200-105828800	Enhancers	Hela-S3	cervix
12	chr12:105827200-105829400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr12:105827400-105828400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr12:105828000-105828600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:105828200-105832600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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