Variant report

Variant	rs73384152
Chromosome Location	chr12:104913238-104913239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12306787	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12307498	1.00[AMR][1000 genomes]
rs12311871	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12317943	1.00[AMR][1000 genomes]
rs73384136	1.00[AMR][1000 genomes]
rs73384149	1.00[AMR][1000 genomes]
rs73384150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832504	chr12:104853331-105028245	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104901200-104919200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:104901800-104920400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:104902000-104915600	Weak transcription	Fetal Brain Male	brain
4	chr12:104904400-104913400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr12:104904400-104916800	Weak transcription	A549	lung
6	chr12:104904400-104917600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr12:104905200-104913400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:104905200-104913400	Weak transcription	Fetal Lung	lung
9	chr12:104905200-104914600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:104905200-104916200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr12:104905200-104916600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr12:104905400-104914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:104905600-104913400	Weak transcription	Colon Smooth Muscle	Colon
14	chr12:104905600-104913400	Weak transcription	Spleen	Spleen
15	chr12:104905800-104916800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:104906800-104917600	Weak transcription	HSMM	muscle
17	chr12:104907400-104917000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr12:104907600-104917000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr12:104907800-104915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr12:104908000-104913400	Weak transcription	Fetal Brain Female	brain
21	chr12:104908600-104920600	Weak transcription	Right Ventricle	heart
22	chr12:104909400-104913800	Enhancers	Primary hematopoietic stem cells	blood
23	chr12:104909400-104919200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr12:104909400-104919400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:104909800-104913600	Weak transcription	Brain Anterior Caudate	brain
26	chr12:104909800-104915000	Weak transcription	Pancreas	Pancrea
27	chr12:104909800-104919400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr12:104910000-104917000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr12:104910200-104913800	Weak transcription	K562	blood
30	chr12:104910400-104918200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr12:104910600-104913400	Weak transcription	Gastric	stomach
32	chr12:104911000-104921800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr12:104911200-104915600	Enhancers	Brain Germinal Matrix	brain
34	chr12:104911400-104918600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr12:104911600-104915600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr12:104911800-104913800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr12:104911800-104914600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:104911800-104916200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr12:104912000-104913800	Enhancers	Primary B cells from cord blood	blood
40	chr12:104912000-104914600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr12:104912000-104919200	Enhancers	Primary B cells from peripheral blood	blood
42	chr12:104912200-104914400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr12:104912200-104914600	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr12:104912200-104915200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr12:104912400-104914200	Enhancers	Primary T cells from cord blood	blood
46	chr12:104912400-104914600	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr12:104912400-104918400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr12:104912800-104913400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr12:104912800-104913800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr12:104912800-104914000	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links