Variant report

Variant	rs73384155
Chromosome Location	chr6:25007816-25007817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24979064..24981330-chr6:25006890..25009589,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11964330	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12110508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12111569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56772860	0.82[EUR][1000 genomes]
rs58272875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58446150	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58858607	0.82[EUR][1000 genomes]
rs59935869	0.82[EUR][1000 genomes]
rs60753079	0.82[EUR][1000 genomes]
rs73384104	0.82[EUR][1000 genomes]
rs73384131	0.82[EUR][1000 genomes]
rs73384137	0.82[EUR][1000 genomes]
rs73384148	0.82[EUR][1000 genomes]
rs73384157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73384158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73384159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73384162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73384165	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73384168	1.00[EUR][1000 genomes]
rs73384170	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1030634	chr6:24938277-25040161	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24997800-25016600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:24998200-25009200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:25004200-25011200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:25004400-25011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:25004600-25008000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:25004600-25008000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:25004800-25008200	Enhancers	HMEC	breast
8	chr6:25006000-25008000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:25006000-25008000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr6:25006200-25008000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:25006200-25011200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:25006400-25008000	Enhancers	Stomach Mucosa	stomach
13	chr6:25006400-25008200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:25006400-25009000	Enhancers	Dnd41	blood
15	chr6:25006400-25010800	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:25006400-25011200	Enhancers	Thymus	Thymus
17	chr6:25006600-25008000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:25006600-25008000	Enhancers	Brain Hippocampus Middle	brain
19	chr6:25006600-25008200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr6:25006600-25008200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:25006600-25008200	Enhancers	HUVEC	blood vessel
22	chr6:25006600-25010800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:25006600-25011200	Enhancers	Fetal Thymus	thymus
24	chr6:25006800-25008000	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr6:25006800-25008000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr6:25006800-25008000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr6:25006800-25008000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:25006800-25008000	Enhancers	Colon Smooth Muscle	Colon
29	chr6:25006800-25008200	Enhancers	Left Ventricle	heart
30	chr6:25006800-25008200	Enhancers	Pancreas	Pancrea
31	chr6:25006800-25008200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr6:25006800-25008200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr6:25006800-25010600	Enhancers	Lung	lung
34	chr6:25007000-25008000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:25007000-25008200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr6:25007000-25008200	Enhancers	Colonic Mucosa	Colon
37	chr6:25007000-25008200	Enhancers	Gastric	stomach
38	chr6:25007000-25008200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:25007000-25008200	Enhancers	Small Intestine	intestine
40	chr6:25007000-25009400	Enhancers	Esophagus	oesophagus
41	chr6:25007000-25014200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:25007200-25008200	Enhancers	Duodenum Mucosa	Duodenum
43	chr6:25007200-25010400	Weak transcription	NHLF	lung
44	chr6:25007200-25010600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:25007200-25010800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr6:25007200-25010800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:25007200-25011200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:25007200-25011600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:25007400-25008000	Enhancers	Hela-S3	cervix
50	chr6:25007400-25008400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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