Variant report

Variant	rs73384397
Chromosome Location	chr12:106647572-106647573
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106644967..106648309-chr12:106659700..106662827,5	MCF-7	breast:
2	chr12:106647187..106649805-chr12:106683824..106686258,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60176754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73384390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73386677	1.00[EUR][1000 genomes]
rs73386681	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799917	chr12:106637876-106649988	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1834434	chr12:106637876-106649988	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3423758	chr12:106646369-106649583	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv6114	chr12:106646456-106649695	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106642800-106647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:106642800-106647800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:106642800-106648400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:106643000-106647800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr12:106643200-106647800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:106643200-106647800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:106643200-106647800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr12:106643200-106648800	Weak transcription	Right Atrium	heart
9	chr12:106643400-106648400	Weak transcription	Fetal Lung	lung
10	chr12:106643400-106648400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr12:106644000-106648200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:106644200-106649800	Weak transcription	Fetal Heart	heart
13	chr12:106644400-106649400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr12:106645600-106647800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:106645800-106647600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:106645800-106647800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr12:106645800-106647800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr12:106645800-106647800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr12:106645800-106647800	Weak transcription	Fetal Muscle Leg	muscle
20	chr12:106645800-106648000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:106645800-106648000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr12:106645800-106648200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:106646000-106647600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr12:106646200-106647600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr12:106646200-106658800	Weak transcription	Monocytes-CD14+_RO01746	blood

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