Variant report

Variant	rs73385337
Chromosome Location	chr6:23621980-23621981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34459500	0.93[ASN][1000 genomes]
rs7743895	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9460902	0.86[ASN][1000 genomes]
rs9460905	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9460906	0.90[AFR][1000 genomes]
rs9466875	0.86[ASN][1000 genomes]
rs9466876	0.86[ASN][1000 genomes]
rs9466879	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv830608	chr6:23558655-23644405	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv883478	chr6:23615399-23659465	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23620600-23622000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:23620800-23622000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:23620800-23622000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:23620800-23622200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:23621000-23622000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:23621000-23622000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:23621000-23622200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:23621400-23622000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:23621800-23622000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:23621800-23622000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:23621800-23622000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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