Variant report

Variant	rs73386485
Chromosome Location	chr10:91539034-91539035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34785987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58399639	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60877521	0.80[AFR][1000 genomes]
rs61236656	0.86[AFR][1000 genomes]
rs73370915	0.81[AFR][1000 genomes]
rs73382916	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386407	1.00[AMR][1000 genomes]
rs73386422	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386498	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
4	chr10:91504200-91544200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:91506400-91539800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:91506400-91541200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:91506400-91543800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:91506400-91544800	Weak transcription	Ovary	ovary
9	chr10:91506400-91549000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:91506600-91540000	Weak transcription	Fetal Stomach	stomach
11	chr10:91506600-91540200	Weak transcription	Fetal Intestine Small	intestine
12	chr10:91506600-91540400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:91506600-91542000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:91506600-91543600	Weak transcription	Brain Germinal Matrix	brain
15	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:91521000-91542800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:91522000-91541800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:91522400-91539800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:91523000-91540000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:91523000-91540200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:91523000-91549400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:91523200-91540000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:91523200-91540000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:91523200-91540200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:91523200-91540200	Weak transcription	Fetal Brain Female	brain
26	chr10:91523400-91539800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:91523400-91540000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:91523400-91540000	Weak transcription	Placenta	Placenta
29	chr10:91523400-91540200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:91523400-91541400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:91523400-91542600	Weak transcription	Osteobl	bone
32	chr10:91523400-91549000	Weak transcription	K562	blood
33	chr10:91523600-91540200	Weak transcription	Lung	lung
34	chr10:91523600-91542000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:91523600-91544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:91528600-91542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:91529000-91539800	Weak transcription	NHLF	lung
38	chr10:91529600-91549000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:91529800-91542600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:91530000-91539800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:91530000-91540000	Weak transcription	HMEC	breast
42	chr10:91530000-91540200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:91530000-91540800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:91530000-91541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr10:91530000-91542600	Weak transcription	Fetal Lung	lung
46	chr10:91530200-91540000	Weak transcription	Primary T cells from cord blood	blood
47	chr10:91531200-91543000	Weak transcription	NH-A	brain
48	chr10:91531400-91541200	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr10:91531600-91540000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:91531600-91543000	Weak transcription	Fetal Intestine Large	intestine

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